miRNA display CGI


Results 81 - 100 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 61914 0.75 0.089601
Target:  5'- gCCCGCGCCG-CCGCCCcccuccuccgcgucaGCGgCGGcGCGg -3'
miRNA:   3'- -GGGCGCGGCgGGCGGG---------------CGC-GCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 103725 0.75 0.097778
Target:  5'- gCCgGcCGCCGCCCGCCgGCGcCGGgaaGCc -3'
miRNA:   3'- -GGgC-GCGGCGGGCGGgCGC-GCCa--CGc -5'
6394 3' -68.6 NC_001847.1 + 102932 0.75 0.097778
Target:  5'- cCCCGCGCCccggcCCCGCCCGCGggccuCGG-GCc -3'
miRNA:   3'- -GGGCGCGGc----GGGCGGGCGC-----GCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 77197 0.74 0.105127
Target:  5'- aCCGCGCUG-CUGCCCGCGaCGGagccGCGg -3'
miRNA:   3'- gGGCGCGGCgGGCGGGCGC-GCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 58810 0.74 0.110311
Target:  5'- gCCUGCGCCGgC-GCCUGgGcCGGUGCGa -3'
miRNA:   3'- -GGGCGCGGCgGgCGGGCgC-GCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 96877 0.74 0.115735
Target:  5'- gUCCGCGCuggggagggacCGCCgUGCUCGCGCGGgacugGCGg -3'
miRNA:   3'- -GGGCGCG-----------GCGG-GCGGGCGCGCCa----CGC- -5'
6394 3' -68.6 NC_001847.1 + 8997 0.73 0.121406
Target:  5'- gCCGCGCUGUuuGCCaucguGCGCGGccGCGa -3'
miRNA:   3'- gGGCGCGGCGggCGGg----CGCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 4202 0.76 0.076644
Target:  5'- gCCgCGCGCaggcaGCCaaaGCCCuGCGCGGUGCc -3'
miRNA:   3'- -GG-GCGCGg----CGGg--CGGG-CGCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 73836 0.76 0.072976
Target:  5'- cCCCGCGCa-CCCGCgcaaaaaacgCCGcCGCGGUGCGc -3'
miRNA:   3'- -GGGCGCGgcGGGCG----------GGC-GCGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 132000 0.77 0.069478
Target:  5'- gCCGCGCCGCCgGCgCCGCcgggcuccCGGUGCu -3'
miRNA:   3'- gGGCGCGGCGGgCG-GGCGc-------GCCACGc -5'
6394 3' -68.6 NC_001847.1 + 73777 0.73 0.130398
Target:  5'- aUCCGCGaCGCCuCGCCgGUGCGGgGCu -3'
miRNA:   3'- -GGGCGCgGCGG-GCGGgCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 106528 0.73 0.13353
Target:  5'- cCCCGCgGCCGCCgCGUagCGCGCGGccgccucGCGg -3'
miRNA:   3'- -GGGCG-CGGCGG-GCGg-GCGCGCCa------CGC- -5'
6394 3' -68.6 NC_001847.1 + 1553 0.72 0.140001
Target:  5'- gCCCGC-CCGCCCgauagcgcGCCCGCGCcuGUGUc -3'
miRNA:   3'- -GGGCGcGGCGGG--------CGGGCGCGc-CACGc -5'
6394 3' -68.6 NC_001847.1 + 10067 0.72 0.140001
Target:  5'- gCCGCGCgggcccagCGcCCCGCCgCGCGCGGgaGCa -3'
miRNA:   3'- gGGCGCG--------GC-GGGCGG-GCGCGCCa-CGc -5'
6394 3' -68.6 NC_001847.1 + 26458 0.72 0.143344
Target:  5'- gCCGCGCgGCUguuCGCCaGCGCGGggaGCGg -3'
miRNA:   3'- gGGCGCGgCGG---GCGGgCGCGCCa--CGC- -5'
6394 3' -68.6 NC_001847.1 + 39472 0.82 0.029073
Target:  5'- gCCCGCGCCGCCC-CCCGCGCcagaGCGg -3'
miRNA:   3'- -GGGCGCGGCGGGcGGGCGCGcca-CGC- -5'
6394 3' -68.6 NC_001847.1 + 132819 0.8 0.041282
Target:  5'- gCCGcCGCUGCCCGCCCGCGUGcUGgGg -3'
miRNA:   3'- gGGC-GCGGCGGGCGGGCGCGCcACgC- -5'
6394 3' -68.6 NC_001847.1 + 46581 0.79 0.050382
Target:  5'- gUCCGCGCCGggcgucagcCCCGCCgGCGCGGccucGCGg -3'
miRNA:   3'- -GGGCGCGGC---------GGGCGGgCGCGCCa---CGC- -5'
6394 3' -68.6 NC_001847.1 + 56845 0.78 0.058462
Target:  5'- gCCGCGCCGCgCCGUCUGCGCccgGCGg -3'
miRNA:   3'- gGGCGCGGCG-GGCGGGCGCGccaCGC- -5'
6394 3' -68.6 NC_001847.1 + 133714 0.77 0.066141
Target:  5'- gCCaCGCGCCuggGCCCGCCaC-CGCGGUGCc -3'
miRNA:   3'- -GG-GCGCGG---CGGGCGG-GcGCGCCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.