miRNA display CGI


Results 1 - 20 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 2226 0.66 0.385702
Target:  5'- gCCaGCGCCGCggCGCUgGgCGCGG-GCGu -3'
miRNA:   3'- gGG-CGCGGCGg-GCGGgC-GCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 89079 0.66 0.393383
Target:  5'- gCgGCGCucuuuCGCCCGCCCaucaaGCuCGaGUGCGa -3'
miRNA:   3'- gGgCGCG-----GCGGGCGGG-----CGcGC-CACGC- -5'
6394 3' -68.6 NC_001847.1 + 12686 0.66 0.393383
Target:  5'- gCUGCaCUGCgCGUCgGCGgGGUGCa -3'
miRNA:   3'- gGGCGcGGCGgGCGGgCGCgCCACGc -5'
6394 3' -68.6 NC_001847.1 + 44583 0.66 0.393383
Target:  5'- gCUCGuCGUCGCCCuCgCGCGCGGcgaggGCc -3'
miRNA:   3'- -GGGC-GCGGCGGGcGgGCGCGCCa----CGc -5'
6394 3' -68.6 NC_001847.1 + 14314 0.66 0.392611
Target:  5'- cCCCGCucccGCUGCUCGCgguggggCCggGCGUGGUGgCGg -3'
miRNA:   3'- -GGGCG----CGGCGGGCG-------GG--CGCGCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 110248 0.66 0.388763
Target:  5'- -aUGCGCgGCCUGCUCGCcCGGgacgagucgacgcgcUGCGa -3'
miRNA:   3'- ggGCGCGgCGGGCGGGCGcGCC---------------ACGC- -5'
6394 3' -68.6 NC_001847.1 + 75300 0.66 0.385702
Target:  5'- aCCGCGCCugGCCggUGCCC-CGCGaG-GCGc -3'
miRNA:   3'- gGGCGCGG--CGG--GCGGGcGCGC-CaCGC- -5'
6394 3' -68.6 NC_001847.1 + 51207 0.66 0.385702
Target:  5'- cCCCGCGCgCacuucgagcggGCCCuGCUCGCG-GGcGCGc -3'
miRNA:   3'- -GGGCGCG-G-----------CGGG-CGGGCGCgCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 43474 0.66 0.385702
Target:  5'- gCCGCaGCCGCagCCGCagCCGCGagagaGG-GCGa -3'
miRNA:   3'- gGGCG-CGGCG--GGCG--GGCGCg----CCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 98520 0.66 0.393383
Target:  5'- gCCaGCuuGUCGCCCa-CCGCGCGGUaGCa -3'
miRNA:   3'- gGG-CG--CGGCGGGcgGGCGCGCCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 118749 0.66 0.393383
Target:  5'- --aGCGCUGCCacaCGCgCgguuguggCGCGCGGUGUGa -3'
miRNA:   3'- gggCGCGGCGG---GCG-G--------GCGCGCCACGC- -5'
6394 3' -68.6 NC_001847.1 + 19323 0.66 0.393383
Target:  5'- aUCCGCagaGCCCGCCgcagcgcagCGCGCGGaGCc -3'
miRNA:   3'- -GGGCGcggCGGGCGG---------GCGCGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 44929 0.66 0.393383
Target:  5'- aCCGUGUCGCUggggCGCUCGgGCuGG-GCGa -3'
miRNA:   3'- gGGCGCGGCGG----GCGGGCgCG-CCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 27271 0.66 0.393383
Target:  5'- uCCCGgccCGCCGUCCGuCCCGU-CGGaGCc -3'
miRNA:   3'- -GGGC---GCGGCGGGC-GGGCGcGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 92406 0.66 0.393383
Target:  5'- aCCCagggggGCGCCaGCCCGaaCUCGCGcCGGUaaGCa -3'
miRNA:   3'- -GGG------CGCGG-CGGGC--GGGCGC-GCCA--CGc -5'
6394 3' -68.6 NC_001847.1 + 73821 0.66 0.393383
Target:  5'- gCCGCGCUGCagCGgCUGCGCGuccUGCc -3'
miRNA:   3'- gGGCGCGGCGg-GCgGGCGCGCc--ACGc -5'
6394 3' -68.6 NC_001847.1 + 72171 0.66 0.393383
Target:  5'- aCCUGCaaaGCCGgCgGCCCGauuGCGuGUGCc -3'
miRNA:   3'- -GGGCG---CGGCgGgCGGGCg--CGC-CACGc -5'
6394 3' -68.6 NC_001847.1 + 56474 0.66 0.393383
Target:  5'- gCCCGCGUgCGCaCGCCgGCGacgcaGGcGCGc -3'
miRNA:   3'- -GGGCGCG-GCGgGCGGgCGCg----CCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 54298 0.66 0.393383
Target:  5'- aCgCGCGCCGCCgcccggaucUGCCCccccaaguCGCGGcGCGc -3'
miRNA:   3'- -GgGCGCGGCGG---------GCGGGc-------GCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 31285 0.66 0.393383
Target:  5'- gCCCGCGggagaCGCUCGUgCUGCuGCGGcGCGc -3'
miRNA:   3'- -GGGCGCg----GCGGGCG-GGCG-CGCCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.