miRNA display CGI


Results 41 - 60 of 1045 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 3' -68.6 NC_001847.1 + 72171 0.66 0.393383
Target:  5'- aCCUGCaaaGCCGgCgGCCCGauuGCGuGUGCc -3'
miRNA:   3'- -GGGCG---CGGCgGgCGGGCg--CGC-CACGc -5'
6394 3' -68.6 NC_001847.1 + 73821 0.66 0.393383
Target:  5'- gCCGCGCUGCagCGgCUGCGCGuccUGCc -3'
miRNA:   3'- gGGCGCGGCGg-GCgGGCGCGCc--ACGc -5'
6394 3' -68.6 NC_001847.1 + 92406 0.66 0.393383
Target:  5'- aCCCagggggGCGCCaGCCCGaaCUCGCGcCGGUaaGCa -3'
miRNA:   3'- -GGG------CGCGG-CGGGC--GGGCGC-GCCA--CGc -5'
6394 3' -68.6 NC_001847.1 + 27271 0.66 0.393383
Target:  5'- uCCCGgccCGCCGUCCGuCCCGU-CGGaGCc -3'
miRNA:   3'- -GGGC---GCGGCGGGC-GGGCGcGCCaCGc -5'
6394 3' -68.6 NC_001847.1 + 44929 0.66 0.393383
Target:  5'- aCCGUGUCGCUggggCGCUCGgGCuGG-GCGa -3'
miRNA:   3'- gGGCGCGGCGG----GCGGGCgCG-CCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 44583 0.66 0.393383
Target:  5'- gCUCGuCGUCGCCCuCgCGCGCGGcgaggGCc -3'
miRNA:   3'- -GGGC-GCGGCGGGcGgGCGCGCCa----CGc -5'
6394 3' -68.6 NC_001847.1 + 14314 0.66 0.392611
Target:  5'- cCCCGCucccGCUGCUCGCgguggggCCggGCGUGGUGgCGg -3'
miRNA:   3'- -GGGCG----CGGCGGGCG-------GG--CGCGCCAC-GC- -5'
6394 3' -68.6 NC_001847.1 + 44098 0.66 0.385702
Target:  5'- gUCUGCGCC-CgCCGCCUGCGCgcaagaugagccGGUuGCu -3'
miRNA:   3'- -GGGCGCGGcG-GGCGGGCGCG------------CCA-CGc -5'
6394 3' -68.6 NC_001847.1 + 70122 0.66 0.385702
Target:  5'- gCCaCGUGgCGCUCGCgCCGCuuGCGGUccGCu -3'
miRNA:   3'- -GG-GCGCgGCGGGCG-GGCG--CGCCA--CGc -5'
6394 3' -68.6 NC_001847.1 + 128167 0.66 0.385702
Target:  5'- gCUGgGCgGCCCGCCgG-GCGGaaGCGc -3'
miRNA:   3'- gGGCgCGgCGGGCGGgCgCGCCa-CGC- -5'
6394 3' -68.6 NC_001847.1 + 29968 0.66 0.385702
Target:  5'- gCCGcCGCCGCCgacgcggccggGCCgGCGCGGcGgGa -3'
miRNA:   3'- gGGC-GCGGCGGg----------CGGgCGCGCCaCgC- -5'
6394 3' -68.6 NC_001847.1 + 53179 0.66 0.385702
Target:  5'- gCCCGCGUgaugaGCgCGCCC--GCGGUGUu -3'
miRNA:   3'- -GGGCGCGg----CGgGCGGGcgCGCCACGc -5'
6394 3' -68.6 NC_001847.1 + 57685 0.66 0.385702
Target:  5'- gCCCgGCGcCCGCCCcaGCCCGC-CGacUGCu -3'
miRNA:   3'- -GGG-CGC-GGCGGG--CGGGCGcGCc-ACGc -5'
6394 3' -68.6 NC_001847.1 + 74845 0.66 0.385702
Target:  5'- gCgCGCGCCGCCCGCC-GCccCGcUGCc -3'
miRNA:   3'- -GgGCGCGGCGGGCGGgCGc-GCcACGc -5'
6394 3' -68.6 NC_001847.1 + 131291 0.66 0.385702
Target:  5'- cCCCgGCGCCGUCuaCGUCUgGgGCGGcGCGa -3'
miRNA:   3'- -GGG-CGCGGCGG--GCGGG-CgCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 2226 0.66 0.385702
Target:  5'- gCCaGCGCCGCggCGCUgGgCGCGG-GCGu -3'
miRNA:   3'- gGG-CGCGGCGg-GCGGgC-GCGCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 43474 0.66 0.385702
Target:  5'- gCCGCaGCCGCagCCGCagCCGCGagagaGG-GCGa -3'
miRNA:   3'- gGGCG-CGGCG--GGCG--GGCGCg----CCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 51207 0.66 0.385702
Target:  5'- cCCCGCGCgCacuucgagcggGCCCuGCUCGCG-GGcGCGc -3'
miRNA:   3'- -GGGCGCG-G-----------CGGG-CGGGCGCgCCaCGC- -5'
6394 3' -68.6 NC_001847.1 + 75300 0.66 0.385702
Target:  5'- aCCGCGCCugGCCggUGCCC-CGCGaG-GCGc -3'
miRNA:   3'- gGGCGCGG--CGG--GCGGGcGCGC-CaCGC- -5'
6394 3' -68.6 NC_001847.1 + 110248 0.66 0.388763
Target:  5'- -aUGCGCgGCCUGCUCGCcCGGgacgagucgacgcgcUGCGa -3'
miRNA:   3'- ggGCGCGgCGGGCGGGCGcGCC---------------ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.