Results 81 - 100 of 1045 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6394 | 3' | -68.6 | NC_001847.1 | + | 1943 | 0.66 | 0.378121 |
Target: 5'- aCUCGgGCCGCCgGCgcucguccucgCCGgGCGGcGCc -3' miRNA: 3'- -GGGCgCGGCGGgCG-----------GGCgCGCCaCGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 135137 | 0.66 | 0.378121 |
Target: 5'- uCUC-CG-CGCCC-CCCGCGCGGggGCu -3' miRNA: 3'- -GGGcGCgGCGGGcGGGCGCGCCa-CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 54102 | 0.66 | 0.378121 |
Target: 5'- gCCCaCGUCGCCCccgcaGUCCGCGgCGGcgucgcccaUGCGc -3' miRNA: 3'- -GGGcGCGGCGGG-----CGGGCGC-GCC---------ACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 53790 | 0.66 | 0.377369 |
Target: 5'- aCCGCaGCCGCCgcgaggaggucugCGCCCccuggcGCGcCGGaGCGg -3' miRNA: 3'- gGGCG-CGGCGG-------------GCGGG------CGC-GCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 9718 | 0.66 | 0.377369 |
Target: 5'- cCCUGCGCggccacuCGCuuGCCaCGCGacCGG-GCGg -3' miRNA: 3'- -GGGCGCG-------GCGggCGG-GCGC--GCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 57286 | 0.66 | 0.377369 |
Target: 5'- uCCCGgGCCGagagCGCCCccaGCGCGcuggccaGUGCGc -3' miRNA: 3'- -GGGCgCGGCgg--GCGGG---CGCGC-------CACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 127008 | 0.66 | 0.370641 |
Target: 5'- cCUCGCGCagcacCGCCCGCCCcuggggccccGCGCc-UGCGc -3' miRNA: 3'- -GGGCGCG-----GCGGGCGGG----------CGCGccACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 86083 | 0.66 | 0.378121 |
Target: 5'- gCUGcCGCCGCCCGCggCCGUGaGcUGCGc -3' miRNA: 3'- gGGC-GCGGCGGGCG--GGCGCgCcACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 99064 | 0.66 | 0.378121 |
Target: 5'- cUCCGCcaGCCGCgCGUCCaGCGCGccUGUGa -3' miRNA: 3'- -GGGCG--CGGCGgGCGGG-CGCGCc-ACGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 100870 | 0.66 | 0.378121 |
Target: 5'- -gCGCGgCGCCCagccGCCgCGCGcCGGUcuGCGc -3' miRNA: 3'- ggGCGCgGCGGG----CGG-GCGC-GCCA--CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 70122 | 0.66 | 0.385702 |
Target: 5'- gCCaCGUGgCGCUCGCgCCGCuuGCGGUccGCu -3' miRNA: 3'- -GG-GCGCgGCGGGCG-GGCG--CGCCA--CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 44098 | 0.66 | 0.385702 |
Target: 5'- gUCUGCGCC-CgCCGCCUGCGCgcaagaugagccGGUuGCu -3' miRNA: 3'- -GGGCGCGGcG-GGCGGGCGCG------------CCA-CGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 42078 | 0.66 | 0.385702 |
Target: 5'- gCUGCGgCGCaUCGgCCuCGCGGUGCc -3' miRNA: 3'- gGGCGCgGCG-GGCgGGcGCGCCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 19856 | 0.66 | 0.38494 |
Target: 5'- gCCCGCGCCcgggggcGCCggcuuaGCCCGCcaccgccaaccgGCGGaGUGg -3' miRNA: 3'- -GGGCGCGG-------CGGg-----CGGGCG------------CGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 85913 | 0.66 | 0.381142 |
Target: 5'- gCCGCGUCGCagacguacacgaaGCCCGCGggcccCGGcGCGa -3' miRNA: 3'- gGGCGCGGCGgg-----------CGGGCGC-----GCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 116801 | 0.66 | 0.378121 |
Target: 5'- gCUGcCGCCgacgguaacgcGCCUGCagCCGCGCGuGUGCu -3' miRNA: 3'- gGGC-GCGG-----------CGGGCG--GGCGCGC-CACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 88696 | 0.66 | 0.378121 |
Target: 5'- aUCCGCGCgcgcauccccacCGCCgCGCCCGaggagGCuGUGCu -3' miRNA: 3'- -GGGCGCG------------GCGG-GCGGGCg----CGcCACGc -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 83705 | 0.66 | 0.378121 |
Target: 5'- -aUGuCGCCGUCCauGUCgCGCGCGG-GCGg -3' miRNA: 3'- ggGC-GCGGCGGG--CGG-GCGCGCCaCGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 37078 | 0.66 | 0.378121 |
Target: 5'- -aCGCGgUacugGCCCGCCUgaGCGCGGagaGCGg -3' miRNA: 3'- ggGCGCgG----CGGGCGGG--CGCGCCa--CGC- -5' |
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6394 | 3' | -68.6 | NC_001847.1 | + | 103711 | 0.66 | 0.370641 |
Target: 5'- aCCaGCGCCaGCgaCGUCCGcCGCGGcUGCc -3' miRNA: 3'- gGG-CGCGG-CGg-GCGGGC-GCGCC-ACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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