Results 1 - 20 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6394 | 5' | -54.5 | NC_001847.1 | + | 66617 | 0.66 | 0.931421 |
Target: 5'- -cCGACGGCgAGGacgaucccgacgGCGGggGC-GCGu -3' miRNA: 3'- aaGUUGCCGgUCC------------UGCCuuCGuUGCu -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 24209 | 0.66 | 0.931421 |
Target: 5'- --uGACGGCCAGGAgCaGgcGCucgGCGAu -3' miRNA: 3'- aagUUGCCGGUCCU-GcCuuCGu--UGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 4540 | 0.66 | 0.931421 |
Target: 5'- -gCGGCGGCCgcccgcGGGugGcGcGGCGugGAa -3' miRNA: 3'- aaGUUGCCGG------UCCugC-CuUCGUugCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 58621 | 0.66 | 0.931421 |
Target: 5'- -cCAGCGcGCCcgcgGGGACGuAGGCcGCGAa -3' miRNA: 3'- aaGUUGC-CGG----UCCUGCcUUCGuUGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 115493 | 0.66 | 0.931421 |
Target: 5'- -cCGGCGGCCGGGccCGcAAGCGGCc- -3' miRNA: 3'- aaGUUGCCGGUCCu-GCcUUCGUUGcu -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 119099 | 0.66 | 0.931421 |
Target: 5'- ---cGCGGCCgccgcGGGGCGGcggggcAGGCAugGGg -3' miRNA: 3'- aaguUGCCGG-----UCCUGCC------UUCGUugCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 100878 | 0.66 | 0.931421 |
Target: 5'- gUCGGCGGCaGGGGCGcGGccGGCGggagACGGg -3' miRNA: 3'- aAGUUGCCGgUCCUGC-CU--UCGU----UGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 53858 | 0.66 | 0.929833 |
Target: 5'- --uGGCGGCgCuGGcggcgccgaccgccGCGGggGCGGCGGg -3' miRNA: 3'- aagUUGCCG-GuCC--------------UGCCuuCGUUGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 98204 | 0.66 | 0.928223 |
Target: 5'- -gCGACGGCCGcGGAgcucCGGGaaaguucuucugcacGGCAGCGu -3' miRNA: 3'- aaGUUGCCGGU-CCU----GCCU---------------UCGUUGCu -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 43091 | 0.66 | 0.92604 |
Target: 5'- cUCGGCGGCgGaGGcgccCGGAGGCGccgGCGGu -3' miRNA: 3'- aAGUUGCCGgU-CCu---GCCUUCGU---UGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 59379 | 0.66 | 0.92604 |
Target: 5'- -gCGGCGGCCGgcaaaaaauacGGagccgGCGGAGGCGcgGCGGu -3' miRNA: 3'- aaGUUGCCGGU-----------CC-----UGCCUUCGU--UGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 75716 | 0.66 | 0.92604 |
Target: 5'- gUCGuCaGCCAGGccCGGGGcGCAGCGAu -3' miRNA: 3'- aAGUuGcCGGUCCu-GCCUU-CGUUGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 17466 | 0.66 | 0.92604 |
Target: 5'- gUCGuacaGGCCGGGGCGcaguacuAGCGACGu -3' miRNA: 3'- aAGUug--CCGGUCCUGCcu-----UCGUUGCu -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 102037 | 0.66 | 0.925488 |
Target: 5'- -gCGGuCGGCCAGGAUGGcgcGAGCGcuguacuGCGc -3' miRNA: 3'- aaGUU-GCCGGUCCUGCC---UUCGU-------UGCu -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 46197 | 0.66 | 0.920407 |
Target: 5'- -gUAGCGGCCGGcGGCGGccGCcgcCGGg -3' miRNA: 3'- aaGUUGCCGGUC-CUGCCuuCGuu-GCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 12490 | 0.66 | 0.920407 |
Target: 5'- --uGGCGGCgGGGGCGGccaagaacccGGGCcaGACGAc -3' miRNA: 3'- aagUUGCCGgUCCUGCC----------UUCG--UUGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 33199 | 0.66 | 0.920407 |
Target: 5'- cUC-GCGGCCAuGACGGAcuacgugauGGCGAUGc -3' miRNA: 3'- aAGuUGCCGGUcCUGCCU---------UCGUUGCu -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 51758 | 0.66 | 0.920407 |
Target: 5'- -cCAacGCGGUCuGGGugGGAuGCGGCGc -3' miRNA: 3'- aaGU--UGCCGG-UCCugCCUuCGUUGCu -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 118977 | 0.66 | 0.920407 |
Target: 5'- gUCcGCGGCCaacGGGGCGGucGCccCGGc -3' miRNA: 3'- aAGuUGCCGG---UCCUGCCuuCGuuGCU- -5' |
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6394 | 5' | -54.5 | NC_001847.1 | + | 129295 | 0.66 | 0.920407 |
Target: 5'- cUCGAgGGCCAGG-CGGcucGCuuCGGg -3' miRNA: 3'- aAGUUgCCGGUCCuGCCuu-CGuuGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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