miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6394 5' -54.5 NC_001847.1 + 100878 0.66 0.931421
Target:  5'- gUCGGCGGCaGGGGCGcGGccGGCGggagACGGg -3'
miRNA:   3'- aAGUUGCCGgUCCUGC-CU--UCGU----UGCU- -5'
6394 5' -54.5 NC_001847.1 + 129295 0.66 0.920407
Target:  5'- cUCGAgGGCCAGG-CGGcucGCuuCGGg -3'
miRNA:   3'- aAGUUgCCGGUCCuGCCuu-CGuuGCU- -5'
6394 5' -54.5 NC_001847.1 + 118977 0.66 0.920407
Target:  5'- gUCcGCGGCCaacGGGGCGGucGCccCGGc -3'
miRNA:   3'- aAGuUGCCGG---UCCUGCCuuCGuuGCU- -5'
6394 5' -54.5 NC_001847.1 + 51758 0.66 0.920407
Target:  5'- -cCAacGCGGUCuGGGugGGAuGCGGCGc -3'
miRNA:   3'- aaGU--UGCCGG-UCCugCCUuCGUUGCu -5'
6394 5' -54.5 NC_001847.1 + 133974 0.66 0.914522
Target:  5'- -aUAAgGcGCCGGGGCuGGGAGCGcgcGCGGc -3'
miRNA:   3'- aaGUUgC-CGGUCCUG-CCUUCGU---UGCU- -5'
6394 5' -54.5 NC_001847.1 + 83134 0.66 0.914522
Target:  5'- cUCGGCGGCCGccgcGGcguCGGgcGCGuccGCGAu -3'
miRNA:   3'- aAGUUGCCGGU----CCu--GCCuuCGU---UGCU- -5'
6394 5' -54.5 NC_001847.1 + 38972 0.66 0.914522
Target:  5'- -gCGGCGGCCGcGGCGGGgcuuAGUAgACGAu -3'
miRNA:   3'- aaGUUGCCGGUcCUGCCU----UCGU-UGCU- -5'
6394 5' -54.5 NC_001847.1 + 119211 0.66 0.908386
Target:  5'- gUCGgcgccGCGGCCaccgcGGGGCGGcggggcAGGCAugGGg -3'
miRNA:   3'- aAGU-----UGCCGG-----UCCUGCC------UUCGUugCU- -5'
6394 5' -54.5 NC_001847.1 + 119151 0.66 0.908386
Target:  5'- gUCGgcgccGCGGCCgccgcGGGGCGGcggggcAGGCAugGGa -3'
miRNA:   3'- aAGU-----UGCCGG-----UCCUGCC------UUCGUugCU- -5'
6394 5' -54.5 NC_001847.1 + 33199 0.66 0.920407
Target:  5'- cUC-GCGGCCAuGACGGAcuacgugauGGCGAUGc -3'
miRNA:   3'- aAGuUGCCGGUcCUGCCU---------UCGUUGCu -5'
6394 5' -54.5 NC_001847.1 + 58578 0.66 0.920407
Target:  5'- aUCGGgGGCCGGGccgcCGGcuGCGugGGc -3'
miRNA:   3'- aAGUUgCCGGUCCu---GCCuuCGUugCU- -5'
6394 5' -54.5 NC_001847.1 + 63934 0.66 0.920407
Target:  5'- aUCAcccagcGCGGCC---GCGGggGCAGCa- -3'
miRNA:   3'- aAGU------UGCCGGuccUGCCuuCGUUGcu -5'
6394 5' -54.5 NC_001847.1 + 119099 0.66 0.931421
Target:  5'- ---cGCGGCCgccgcGGGGCGGcggggcAGGCAugGGg -3'
miRNA:   3'- aaguUGCCGG-----UCCUGCC------UUCGUugCU- -5'
6394 5' -54.5 NC_001847.1 + 115493 0.66 0.931421
Target:  5'- -cCGGCGGCCGGGccCGcAAGCGGCc- -3'
miRNA:   3'- aaGUUGCCGGUCCu-GCcUUCGUUGcu -5'
6394 5' -54.5 NC_001847.1 + 58621 0.66 0.931421
Target:  5'- -cCAGCGcGCCcgcgGGGACGuAGGCcGCGAa -3'
miRNA:   3'- aaGUUGC-CGG----UCCUGCcUUCGuUGCU- -5'
6394 5' -54.5 NC_001847.1 + 17466 0.66 0.92604
Target:  5'- gUCGuacaGGCCGGGGCGcaguacuAGCGACGu -3'
miRNA:   3'- aAGUug--CCGGUCCUGCcu-----UCGUUGCu -5'
6394 5' -54.5 NC_001847.1 + 75716 0.66 0.92604
Target:  5'- gUCGuCaGCCAGGccCGGGGcGCAGCGAu -3'
miRNA:   3'- aAGUuGcCGGUCCu-GCCUU-CGUUGCU- -5'
6394 5' -54.5 NC_001847.1 + 102037 0.66 0.925488
Target:  5'- -gCGGuCGGCCAGGAUGGcgcGAGCGcuguacuGCGc -3'
miRNA:   3'- aaGUU-GCCGGUCCUGCC---UUCGU-------UGCu -5'
6394 5' -54.5 NC_001847.1 + 74159 0.66 0.920407
Target:  5'- cUCGACGGCgCcguGGGCGcgcGCAGCGGg -3'
miRNA:   3'- aAGUUGCCG-Gu--CCUGCcuuCGUUGCU- -5'
6394 5' -54.5 NC_001847.1 + 68103 0.66 0.920407
Target:  5'- cUCAGCGuGCCacaAGGGCGGcgacGCGGCa- -3'
miRNA:   3'- aAGUUGC-CGG---UCCUGCCuu--CGUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.