miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6395 3' -56.9 NC_001847.1 + 56299 0.66 0.859444
Target:  5'- gCAGucUGCGGCGUcgcGCGgcGGGCGCGcGAAg -3'
miRNA:   3'- aGUUu-GCGCUGCA---UGC--CCCGCGC-CUU- -5'
6395 3' -56.9 NC_001847.1 + 69464 0.66 0.859444
Target:  5'- ---cGCGCGGCGgcgGCGGGGCuccugcugGcCGGGc -3'
miRNA:   3'- aguuUGCGCUGCa--UGCCCCG--------C-GCCUu -5'
6395 3' -56.9 NC_001847.1 + 74690 0.66 0.857129
Target:  5'- -aGGACgGCGGCcggcgcuuuugccuGUACGGGGCGCuGGc- -3'
miRNA:   3'- agUUUG-CGCUG--------------CAUGCCCCGCG-CCuu -5'
6395 3' -56.9 NC_001847.1 + 28824 0.66 0.851657
Target:  5'- gCAGGCGCgGugGUGCGGcugcuagaacGCGCGGc- -3'
miRNA:   3'- aGUUUGCG-CugCAUGCCc---------CGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 108116 0.66 0.851657
Target:  5'- gCGAGCGCGACG-GCGaGGGUccugGCaGAAg -3'
miRNA:   3'- aGUUUGCGCUGCaUGC-CCCG----CGcCUU- -5'
6395 3' -56.9 NC_001847.1 + 86527 0.66 0.851657
Target:  5'- cUggGCGCccGCGUGCuGGcGGCGCGGc- -3'
miRNA:   3'- aGuuUGCGc-UGCAUG-CC-CCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 132656 0.66 0.851657
Target:  5'- ----uCGCGACGUcuucacACGGcGGCGgGGGc -3'
miRNA:   3'- aguuuGCGCUGCA------UGCC-CCGCgCCUu -5'
6395 3' -56.9 NC_001847.1 + 94505 0.66 0.851657
Target:  5'- -gAGGCGCGGCGgACGuGGGgGaaaGGGAg -3'
miRNA:   3'- agUUUGCGCUGCaUGC-CCCgCg--CCUU- -5'
6395 3' -56.9 NC_001847.1 + 5303 0.66 0.851657
Target:  5'- gCGAGCGCGACG-GCGaGGGUccugGCaGAAg -3'
miRNA:   3'- aGUUUGCGCUGCaUGC-CCCG----CGcCUU- -5'
6395 3' -56.9 NC_001847.1 + 110114 0.66 0.851657
Target:  5'- gCAAGCGUGGCaucaugGGGGCGCuGAAg -3'
miRNA:   3'- aGUUUGCGCUGcaug--CCCCGCGcCUU- -5'
6395 3' -56.9 NC_001847.1 + 12369 0.66 0.851657
Target:  5'- -gGAGCGuCGGCGgcugcggccuCGGGGCGCGu-- -3'
miRNA:   3'- agUUUGC-GCUGCau--------GCCCCGCGCcuu -5'
6395 3' -56.9 NC_001847.1 + 16614 0.66 0.850867
Target:  5'- ---cAUGCGugGUcuuugggGgGGGGCGCGGc- -3'
miRNA:   3'- aguuUGCGCugCA-------UgCCCCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 3856 0.66 0.850867
Target:  5'- cCAGACGUaGACGgcgcCGGGGCugcgcagcucccaGCGGAn -3'
miRNA:   3'- aGUUUGCG-CUGCau--GCCCCG-------------CGCCUu -5'
6395 3' -56.9 NC_001847.1 + 83943 0.66 0.84367
Target:  5'- cUCGAaguGCGCG-CGgggcCGGGG-GCGGAGa -3'
miRNA:   3'- -AGUU---UGCGCuGCau--GCCCCgCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 96087 0.66 0.84367
Target:  5'- gCAAugGCGGagcCGgaguCGGGGC-CGGAGc -3'
miRNA:   3'- aGUUugCGCU---GCau--GCCCCGcGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 83235 0.66 0.84367
Target:  5'- --uGACGCcGCGgcCGGGGCgGCGGc- -3'
miRNA:   3'- aguUUGCGcUGCauGCCCCG-CGCCuu -5'
6395 3' -56.9 NC_001847.1 + 21009 0.66 0.842861
Target:  5'- cCGcGCGCGGCuGUGCGGGcgacccuGCGCaGAGa -3'
miRNA:   3'- aGUuUGCGCUG-CAUGCCC-------CGCGcCUU- -5'
6395 3' -56.9 NC_001847.1 + 29333 0.66 0.841237
Target:  5'- gCGAGCGCGA-GUGCGcGGGCggccguugaaaacaGCGGc- -3'
miRNA:   3'- aGUUUGCGCUgCAUGC-CCCG--------------CGCCuu -5'
6395 3' -56.9 NC_001847.1 + 4558 0.66 0.838785
Target:  5'- --uGGCGCGGCGUggaaguggaagugguGCGGGuCGCGGu- -3'
miRNA:   3'- aguUUGCGCUGCA---------------UGCCCcGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 64174 0.66 0.835491
Target:  5'- gCuuGCGCGG---ACGGGGCgGCGGGc -3'
miRNA:   3'- aGuuUGCGCUgcaUGCCCCG-CGCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.