miRNA display CGI

Results 21 - 40 of 1656 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6395	5'	-62.6	NC_001847.1	+	84565	0.66	0.606912
	Target:  5'- cGCuCCAgGuagaacAGCauGCGCGCCAgcaGCUGCg -3' miRNA:   3'- aCG-GGUgC------UCG--CGCGCGGUag-CGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	71013	0.66	0.606912
	Target:  5'- aUGUCCaguacgGCGGccGCGCacGCGUCuggCGCCGCg -3' miRNA:   3'- -ACGGG------UGCU--CGCG--CGCGGua-GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	47381	0.66	0.606912
	Target:  5'- gGCCCgACGAGCuCGa-CgAUCGCCGg -3' miRNA:   3'- aCGGG-UGCUCGcGCgcGgUAGCGGCg -5'
6395	5'	-62.6	NC_001847.1	+	37760	0.66	0.606912
	Target:  5'- gUGCCCAU--GCGCaGCGCguUCGCgaucaGCu -3' miRNA:   3'- -ACGGGUGcuCGCG-CGCGguAGCGg----CG- -5'
6395	5'	-62.6	NC_001847.1	+	131183	0.66	0.606912
	Target:  5'- gGCCCACcucGCGCugGCGCUGUgGgUCGCg -3' miRNA:   3'- aCGGGUGcu-CGCG--CGCGGUAgC-GGCG- -5'
6395	5'	-62.6	NC_001847.1	+	56178	0.66	0.606912
	Target:  5'- cGCCCcCGAggcuGCGCgaGCGCCA--GCCuGCg -3' miRNA:   3'- aCGGGuGCU----CGCG--CGCGGUagCGG-CG- -5'
6395	5'	-62.6	NC_001847.1	+	125070	0.66	0.606912
	Target:  5'- cGCgCGCGgcggGGCGCuGgGCCcgCGCgGCc -3' miRNA:   3'- aCGgGUGC----UCGCG-CgCGGuaGCGgCG- -5'
6395	5'	-62.6	NC_001847.1	+	116924	0.66	0.606912
	Target:  5'- cGCgCACGAcCGCcgagagacCGCCAgcccgagaccUCGCCGCg -3' miRNA:   3'- aCGgGUGCUcGCGc-------GCGGU----------AGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	1961	0.66	0.606912
	Target:  5'- cGUCCucgcCGGGCgGCGcCGCCAgCGCCu- -3' miRNA:   3'- aCGGGu---GCUCG-CGC-GCGGUaGCGGcg -5'
6395	5'	-62.6	NC_001847.1	+	11398	0.66	0.606912
	Target:  5'- cUGCUauCAUGcAGCGcCGcCGCCGaUGCCGCc -3' miRNA:   3'- -ACGG--GUGC-UCGC-GC-GCGGUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	15135	0.66	0.606912
	Target:  5'- cGCUCAccCGGGCaGCGCGCUguaguugacGUUGCCa- -3' miRNA:   3'- aCGGGU--GCUCG-CGCGCGG---------UAGCGGcg -5'
6395	5'	-62.6	NC_001847.1	+	22395	0.66	0.606912
	Target:  5'- cGCCCgggccgcgGCGAGCGUGC----UCGuCCGCg -3' miRNA:   3'- aCGGG--------UGCUCGCGCGcgguAGC-GGCG- -5'
6395	5'	-62.6	NC_001847.1	+	29976	0.66	0.606912
	Target:  5'- cGCCgACGcGGC-CGgGCCggCGCgGCg -3' miRNA:   3'- aCGGgUGC-UCGcGCgCGGuaGCGgCG- -5'
6395	5'	-62.6	NC_001847.1	+	36968	0.66	0.606912
	Target:  5'- cUGCCUAgaggacUGGGCGCGcCGCgGcgUGCUGCu -3' miRNA:   3'- -ACGGGU------GCUCGCGC-GCGgUa-GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	83630	0.66	0.605928
	Target:  5'- cGCCUGCcGGCGCcgcaccgGCGCgG-CGCUGCu -3' miRNA:   3'- aCGGGUGcUCGCG-------CGCGgUaGCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	74424	0.66	0.605928
	Target:  5'- cGCCCGuCGuggaggucguggcGGCGCacgaCGCCGUggCGCUGCa -3' miRNA:   3'- aCGGGU-GC-------------UCGCGc---GCGGUA--GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	47498	0.66	0.605928
	Target:  5'- aGCCCaaacaGCGcaguuggcuuccAGCGCagcccggGCGCCAaaGCCGCc -3' miRNA:   3'- aCGGG-----UGC------------UCGCG-------CGCGGUagCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	85064	0.66	0.603959
	Target:  5'- aGCaUCAgGGGCGCggugccaaugaucaGCGCCAgcagGCCGCc -3' miRNA:   3'- aCG-GGUgCUCGCG--------------CGCGGUag--CGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	102043	0.66	0.603959
	Target:  5'- gGCCaggauggCGCGAGCgcuguacuGCGCGCCGcgcagaaaguacUGCCGCa -3' miRNA:   3'- aCGG-------GUGCUCG--------CGCGCGGUa-----------GCGGCG- -5'
6395	5'	-62.6	NC_001847.1	+	58642	0.66	0.603959
	Target:  5'- aGgCCGCGAacacgggcucccagGCGCugcagGCGCCGcUGCCGUg -3' miRNA:   3'- aCgGGUGCU--------------CGCG-----CGCGGUaGCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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