Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6396 | 3' | -50.9 | NC_001847.1 | + | 130733 | 0.66 | 0.992201 |
Target: 5'- cGCGcugcCGCCGUCGGcgucGAcgGCG-GCGAc -3' miRNA: 3'- -CGCa---GCGGCAGCCu---UUuaCGCuUGUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 5895 | 0.66 | 0.992201 |
Target: 5'- gGCGgccgCGCCGUCGcaGAuuGUGCGccCGGg -3' miRNA: 3'- -CGCa---GCGGCAGC--CUuuUACGCuuGUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 97709 | 0.66 | 0.992201 |
Target: 5'- uGCGcUCGCCGUCGucGGcgG-GGGCAGa -3' miRNA: 3'- -CGC-AGCGGCAGCcuUUuaCgCUUGUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 99369 | 0.66 | 0.992201 |
Target: 5'- uGCG-CGCCGUUaGcgGGUGCGAGuCGAu -3' miRNA: 3'- -CGCaGCGGCAGcCuuUUACGCUU-GUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 88256 | 0.66 | 0.992201 |
Target: 5'- cGCGgggCGCCGggCGGGGAcgggGgGAGCGc -3' miRNA: 3'- -CGCa--GCGGCa-GCCUUUua--CgCUUGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 85953 | 0.66 | 0.991866 |
Target: 5'- cGCGUUGCCGUCcccgcuugcaGCGGACGc -3' miRNA: 3'- -CGCAGCGGCAGccuuuua---CGCUUGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 111277 | 0.66 | 0.991039 |
Target: 5'- gGCGgCGCCGggcCGGggGcgGCGcuCGg -3' miRNA: 3'- -CGCaGCGGCa--GCCuuUuaCGCuuGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 108608 | 0.66 | 0.991039 |
Target: 5'- cGCG-CGCCGaaaacgugcucCGGggGAcgGCGGGCGAc -3' miRNA: 3'- -CGCaGCGGCa----------GCCuuUUa-CGCUUGUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 115929 | 0.66 | 0.991039 |
Target: 5'- gGgGcUGCCGUCGGGAA---CGAGCAGg -3' miRNA: 3'- -CgCaGCGGCAGCCUUUuacGCUUGUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 8464 | 0.66 | 0.991039 |
Target: 5'- gGCGgCGCCGggcCGGggGcgGCGcuCGg -3' miRNA: 3'- -CGCaGCGGCa--GCCuuUuaCGCuuGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 15305 | 0.66 | 0.991039 |
Target: 5'- cCGgcaCGgCGUCGGggGccGCGGGCGu -3' miRNA: 3'- cGCa--GCgGCAGCCuuUuaCGCUUGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 81160 | 0.66 | 0.989743 |
Target: 5'- cGCGgCGCCGggCGGAAGacgugGUGCGcguCGAg -3' miRNA: 3'- -CGCaGCGGCa-GCCUUU-----UACGCuu-GUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 73212 | 0.66 | 0.989743 |
Target: 5'- cGCGcCGCCGcugacgCGGAGGAgGgGGGCGg -3' miRNA: 3'- -CGCaGCGGCa-----GCCUUUUaCgCUUGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 90748 | 0.66 | 0.989743 |
Target: 5'- cGCGUgGCCGggcccCGGGAGcgG-GAGCGc -3' miRNA: 3'- -CGCAgCGGCa----GCCUUUuaCgCUUGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 33716 | 0.66 | 0.989743 |
Target: 5'- cGCGUgGCCGagcUGGggGA-GCGAcgcGCAGa -3' miRNA: 3'- -CGCAgCGGCa--GCCuuUUaCGCU---UGUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 108078 | 0.66 | 0.988306 |
Target: 5'- cGCGgUGCCGccCGGggGGcUGCGGGCc- -3' miRNA: 3'- -CGCaGCGGCa-GCCuuUU-ACGCUUGuu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 82473 | 0.66 | 0.988306 |
Target: 5'- uGCGgcgUGCCGUgGGAcGagcccgcggccGUGCGGGCGg -3' miRNA: 3'- -CGCa--GCGGCAgCCUuU-----------UACGCUUGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 79923 | 0.66 | 0.988306 |
Target: 5'- aGCGUCGCCGcCacGAAGuacgucGCGGGCAu -3' miRNA: 3'- -CGCAGCGGCaGc-CUUUua----CGCUUGUu -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 14302 | 0.66 | 0.988306 |
Target: 5'- gGCGUgGCCGgccgccucUCGGGgccucaucgAGcgGCGGGCAGa -3' miRNA: 3'- -CGCAgCGGC--------AGCCU---------UUuaCGCUUGUU- -5' |
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6396 | 3' | -50.9 | NC_001847.1 | + | 33521 | 0.66 | 0.988306 |
Target: 5'- gGCGcCGCCG-CGGAGGcgccgggcGCGGGCGc -3' miRNA: 3'- -CGCaGCGGCaGCCUUUua------CGCUUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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