miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 3' -50.9 NC_001847.1 + 130733 0.66 0.992201
Target:  5'- cGCGcugcCGCCGUCGGcgucGAcgGCG-GCGAc -3'
miRNA:   3'- -CGCa---GCGGCAGCCu---UUuaCGCuUGUU- -5'
6396 3' -50.9 NC_001847.1 + 113685 0.66 0.984968
Target:  5'- uCGUCGUCGUCGGcuGccgcguccgcGUGCGgGACGGg -3'
miRNA:   3'- cGCAGCGGCAGCCuuU----------UACGC-UUGUU- -5'
6396 3' -50.9 NC_001847.1 + 51522 0.66 0.984968
Target:  5'- uGCGgCGCCGgcaggCGGggGcgGCGccCAGg -3'
miRNA:   3'- -CGCaGCGGCa----GCCuuUuaCGCuuGUU- -5'
6396 3' -50.9 NC_001847.1 + 68951 0.66 0.984968
Target:  5'- gGCGgCGCCGaugCGGAAGAggggGCGGccgGCGc -3'
miRNA:   3'- -CGCaGCGGCa--GCCUUUUa---CGCU---UGUu -5'
6396 3' -50.9 NC_001847.1 + 59233 0.66 0.984968
Target:  5'- cGCGUCgGCCGUCGGcgaugGCGccGGCc- -3'
miRNA:   3'- -CGCAG-CGGCAGCCuuuuaCGC--UUGuu -5'
6396 3' -50.9 NC_001847.1 + 17866 0.66 0.986717
Target:  5'- aGCGcCGCCGggucgcccguccUCGGgcGggGCGGGCGg -3'
miRNA:   3'- -CGCaGCGGC------------AGCCuuUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 14302 0.66 0.988306
Target:  5'- gGCGUgGCCGgccgccucUCGGGgccucaucgAGcgGCGGGCAGa -3'
miRNA:   3'- -CGCAgCGGC--------AGCCU---------UUuaCGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 79923 0.66 0.988306
Target:  5'- aGCGUCGCCGcCacGAAGuacgucGCGGGCAu -3'
miRNA:   3'- -CGCAGCGGCaGc-CUUUua----CGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 33521 0.66 0.988306
Target:  5'- gGCGcCGCCG-CGGAGGcgccgggcGCGGGCGc -3'
miRNA:   3'- -CGCaGCGGCaGCCUUUua------CGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 91578 0.66 0.984968
Target:  5'- cGCGUCGcCCG-CGGcGAA-GCGcGCAAa -3'
miRNA:   3'- -CGCAGC-GGCaGCCuUUUaCGCuUGUU- -5'
6396 3' -50.9 NC_001847.1 + 97885 0.66 0.986717
Target:  5'- -aGUCGgCGgcgCGGAug--GCGAACAGc -3'
miRNA:   3'- cgCAGCgGCa--GCCUuuuaCGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 108078 0.66 0.988306
Target:  5'- cGCGgUGCCGccCGGggGGcUGCGGGCc- -3'
miRNA:   3'- -CGCaGCGGCa-GCCuuUU-ACGCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 99369 0.66 0.992201
Target:  5'- uGCG-CGCCGUUaGcgGGUGCGAGuCGAu -3'
miRNA:   3'- -CGCaGCGGCAGcCuuUUACGCUU-GUU- -5'
6396 3' -50.9 NC_001847.1 + 88256 0.66 0.992201
Target:  5'- cGCGgggCGCCGggCGGGGAcgggGgGAGCGc -3'
miRNA:   3'- -CGCa--GCGGCa-GCCUUUua--CgCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 108608 0.66 0.991039
Target:  5'- cGCG-CGCCGaaaacgugcucCGGggGAcgGCGGGCGAc -3'
miRNA:   3'- -CGCaGCGGCa----------GCCuuUUa-CGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 15305 0.66 0.991039
Target:  5'- cCGgcaCGgCGUCGGggGccGCGGGCGu -3'
miRNA:   3'- cGCa--GCgGCAGCCuuUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 8464 0.66 0.991039
Target:  5'- gGCGgCGCCGggcCGGggGcgGCGcuCGg -3'
miRNA:   3'- -CGCaGCGGCa--GCCuuUuaCGCuuGUu -5'
6396 3' -50.9 NC_001847.1 + 90748 0.66 0.989743
Target:  5'- cGCGUgGCCGggcccCGGGAGcgG-GAGCGc -3'
miRNA:   3'- -CGCAgCGGCa----GCCUUUuaCgCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 73212 0.66 0.989743
Target:  5'- cGCGcCGCCGcugacgCGGAGGAgGgGGGCGg -3'
miRNA:   3'- -CGCaGCGGCa-----GCCUUUUaCgCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 81160 0.66 0.989743
Target:  5'- cGCGgCGCCGggCGGAAGacgugGUGCGcguCGAg -3'
miRNA:   3'- -CGCaGCGGCa-GCCUUU-----UACGCuu-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.