miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 3' -50.9 NC_001847.1 + 97885 0.66 0.986717
Target:  5'- -aGUCGgCGgcgCGGAug--GCGAACAGc -3'
miRNA:   3'- cgCAGCgGCa--GCCUuuuaCGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 17866 0.66 0.986717
Target:  5'- aGCGcCGCCGggucgcccguccUCGGgcGggGCGGGCGg -3'
miRNA:   3'- -CGCaGCGGC------------AGCCuuUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 59233 0.66 0.984968
Target:  5'- cGCGUCgGCCGUCGGcgaugGCGccGGCc- -3'
miRNA:   3'- -CGCAG-CGGCAGCCuuuuaCGC--UUGuu -5'
6396 3' -50.9 NC_001847.1 + 68951 0.66 0.984968
Target:  5'- gGCGgCGCCGaugCGGAAGAggggGCGGccgGCGc -3'
miRNA:   3'- -CGCaGCGGCa--GCCUUUUa---CGCU---UGUu -5'
6396 3' -50.9 NC_001847.1 + 91578 0.66 0.984968
Target:  5'- cGCGUCGcCCG-CGGcGAA-GCGcGCAAa -3'
miRNA:   3'- -CGCAGC-GGCaGCCuUUUaCGCuUGUU- -5'
6396 3' -50.9 NC_001847.1 + 113685 0.66 0.984968
Target:  5'- uCGUCGUCGUCGGcuGccgcguccgcGUGCGgGACGGg -3'
miRNA:   3'- cGCAGCGGCAGCCuuU----------UACGC-UUGUU- -5'
6396 3' -50.9 NC_001847.1 + 51522 0.66 0.984968
Target:  5'- uGCGgCGCCGgcaggCGGggGcgGCGccCAGg -3'
miRNA:   3'- -CGCaGCGGCa----GCCuuUuaCGCuuGUU- -5'
6396 3' -50.9 NC_001847.1 + 43378 0.67 0.983048
Target:  5'- aGCGcCGCCGaCGGAGcgcccGCGGACc- -3'
miRNA:   3'- -CGCaGCGGCaGCCUUuua--CGCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 42946 0.67 0.983048
Target:  5'- aGCGgccgaCGCCGcgcgCGGggGggGCGGGCc- -3'
miRNA:   3'- -CGCa----GCGGCa---GCCuuUuaCGCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 26953 0.67 0.980948
Target:  5'- gGCgGUCGCCGgagUUGGAAAugagGUGCGcGCGc -3'
miRNA:   3'- -CG-CAGCGGC---AGCCUUU----UACGCuUGUu -5'
6396 3' -50.9 NC_001847.1 + 96492 0.67 0.980948
Target:  5'- gGCGUCGCCa-CGGcaacGcgGCGGGCAu -3'
miRNA:   3'- -CGCAGCGGcaGCCuu--UuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 54107 0.67 0.97866
Target:  5'- gGCGcUCGCCGcgCGGGAg--GCGcAGCAc -3'
miRNA:   3'- -CGC-AGCGGCa-GCCUUuuaCGC-UUGUu -5'
6396 3' -50.9 NC_001847.1 + 14862 0.67 0.97866
Target:  5'- aGCGUUG-CGUCGGucgg-GUGGACAGc -3'
miRNA:   3'- -CGCAGCgGCAGCCuuuuaCGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 61437 0.67 0.97866
Target:  5'- cGCGgccgCGCCGcCGGgcGcgGCGAGgCGGu -3'
miRNA:   3'- -CGCa---GCGGCaGCCuuUuaCGCUU-GUU- -5'
6396 3' -50.9 NC_001847.1 + 131183 0.67 0.976175
Target:  5'- gGCGcccUCGCCGcCGGAGAcgGCGc---- -3'
miRNA:   3'- -CGC---AGCGGCaGCCUUUuaCGCuuguu -5'
6396 3' -50.9 NC_001847.1 + 119038 0.67 0.976175
Target:  5'- uCGUCGUCGUCacucGAGAcgGCGcGCGAa -3'
miRNA:   3'- cGCAGCGGCAGc---CUUUuaCGCuUGUU- -5'
6396 3' -50.9 NC_001847.1 + 28370 0.67 0.976175
Target:  5'- gGCGcccUCGCCGcCGGAGAcgGCGc---- -3'
miRNA:   3'- -CGC---AGCGGCaGCCUUUuaCGCuuguu -5'
6396 3' -50.9 NC_001847.1 + 85789 0.67 0.976175
Target:  5'- uGCGgUGCgCGUC-GAGGGUGCGGGCGc -3'
miRNA:   3'- -CGCaGCG-GCAGcCUUUUACGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 85854 0.67 0.974586
Target:  5'- cGCGUCGCUGgcgCGGAuguuauacggcGCGGACc- -3'
miRNA:   3'- -CGCAGCGGCa--GCCUuuua-------CGCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 42165 0.67 0.973484
Target:  5'- aCGUUGCCGgCGGGugcuggcgGAAUGCGAGg-- -3'
miRNA:   3'- cGCAGCGGCaGCCU--------UUUACGCUUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.