miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 3' -50.9 NC_001847.1 + 2062 0.72 0.860842
Target:  5'- cGCGcCGCCGcagCGGugGcgGCGAGCGc -3'
miRNA:   3'- -CGCaGCGGCa--GCCuuUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 2875 0.77 0.561731
Target:  5'- gGCGUCGUCGUCGGGccGGGUGCGucGCc- -3'
miRNA:   3'- -CGCAGCGGCAGCCU--UUUACGCu-UGuu -5'
6396 3' -50.9 NC_001847.1 + 5058 0.73 0.799957
Target:  5'- cGCGUCGCgGUCGGGcgcggcccagGAcgGCGAcGCGu -3'
miRNA:   3'- -CGCAGCGgCAGCCU----------UUuaCGCU-UGUu -5'
6396 3' -50.9 NC_001847.1 + 5895 0.66 0.992201
Target:  5'- gGCGgccgCGCCGUCGcaGAuuGUGCGccCGGg -3'
miRNA:   3'- -CGCa---GCGGCAGC--CUuuUACGCuuGUU- -5'
6396 3' -50.9 NC_001847.1 + 8464 0.66 0.991039
Target:  5'- gGCGgCGCCGggcCGGggGcgGCGcuCGg -3'
miRNA:   3'- -CGCaGCGGCa--GCCuuUuaCGCuuGUu -5'
6396 3' -50.9 NC_001847.1 + 8553 0.7 0.910804
Target:  5'- uGCGUCGUCGUCG---AcgGCGAugAGg -3'
miRNA:   3'- -CGCAGCGGCAGCcuuUuaCGCUugUU- -5'
6396 3' -50.9 NC_001847.1 + 12939 0.68 0.97058
Target:  5'- cGUGUCGUCGUgCGGuggGGcgGCGGGCc- -3'
miRNA:   3'- -CGCAGCGGCA-GCCu--UUuaCGCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 14302 0.66 0.988306
Target:  5'- gGCGUgGCCGgccgccucUCGGGgccucaucgAGcgGCGGGCAGa -3'
miRNA:   3'- -CGCAgCGGC--------AGCCU---------UUuaCGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 14862 0.67 0.97866
Target:  5'- aGCGUUG-CGUCGGucgg-GUGGACAGc -3'
miRNA:   3'- -CGCAGCgGCAGCCuuuuaCGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 15305 0.66 0.991039
Target:  5'- cCGgcaCGgCGUCGGggGccGCGGGCGu -3'
miRNA:   3'- cGCa--GCgGCAGCCuuUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 16900 0.69 0.951338
Target:  5'- uGCGUCGCCGgucucgcgcgggCGGGAguugcacuccagcGAUGCGuuucGCAGg -3'
miRNA:   3'- -CGCAGCGGCa-----------GCCUU-------------UUACGCu---UGUU- -5'
6396 3' -50.9 NC_001847.1 + 17866 0.66 0.986717
Target:  5'- aGCGcCGCCGggucgcccguccUCGGgcGggGCGGGCGg -3'
miRNA:   3'- -CGCaGCGGC------------AGCCuuUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 19690 0.73 0.790524
Target:  5'- uGCG-CGCCGUCGGuuuGAAUGCcGGCu- -3'
miRNA:   3'- -CGCaGCGGCAGCCu--UUUACGcUUGuu -5'
6396 3' -50.9 NC_001847.1 + 20727 0.67 0.973484
Target:  5'- uUGcCGCCGUCGGAcAGAccgGCGGugAGg -3'
miRNA:   3'- cGCaGCGGCAGCCU-UUUa--CGCUugUU- -5'
6396 3' -50.9 NC_001847.1 + 21831 0.71 0.87633
Target:  5'- uCGUCGCCGUCcGAGGcgGaGAACGAg -3'
miRNA:   3'- cGCAGCGGCAGcCUUUuaCgCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 22880 0.67 0.973484
Target:  5'- gGgGUCGCCGcCGGGGuucUGCaaGAGCAu -3'
miRNA:   3'- -CgCAGCGGCaGCCUUuu-ACG--CUUGUu -5'
6396 3' -50.9 NC_001847.1 + 26879 0.7 0.922812
Target:  5'- cGCGgccgccacCGCCGUCGGGcaacacgcagggGGA-GCGAGCGAg -3'
miRNA:   3'- -CGCa-------GCGGCAGCCU------------UUUaCGCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 26953 0.67 0.980948
Target:  5'- gGCgGUCGCCGgagUUGGAAAugagGUGCGcGCGc -3'
miRNA:   3'- -CG-CAGCGGC---AGCCUUU----UACGCuUGUu -5'
6396 3' -50.9 NC_001847.1 + 28370 0.67 0.976175
Target:  5'- gGCGcccUCGCCGcCGGAGAcgGCGc---- -3'
miRNA:   3'- -CGC---AGCGGCaGCCUUUuaCGCuuguu -5'
6396 3' -50.9 NC_001847.1 + 30360 0.68 0.960512
Target:  5'- cGCGUUGCUGgcgggccacUCGGcgcuGGUGCGGGCGc -3'
miRNA:   3'- -CGCAGCGGC---------AGCCuu--UUACGCUUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.