miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 3' -50.9 NC_001847.1 + 2875 0.77 0.561731
Target:  5'- gGCGUCGUCGUCGGGccGGGUGCGucGCc- -3'
miRNA:   3'- -CGCAGCGGCAGCCU--UUUACGCu-UGuu -5'
6396 3' -50.9 NC_001847.1 + 53868 0.68 0.956683
Target:  5'- gGCGgCGCCGaccgccgCGGggGcgGCGGGCc- -3'
miRNA:   3'- -CGCaGCGGCa------GCCuuUuaCGCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 30360 0.68 0.960512
Target:  5'- cGCGUUGCUGgcgggccacUCGGcgcuGGUGCGGGCGc -3'
miRNA:   3'- -CGCAGCGGC---------AGCCuu--UUACGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 97709 0.66 0.992201
Target:  5'- uGCGcUCGCCGUCGucGGcgG-GGGCAGa -3'
miRNA:   3'- -CGC-AGCGGCAGCcuUUuaCgCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 115750 0.73 0.799957
Target:  5'- uGCGUCGCCG-CGGAgccGAcgGgGAGCc- -3'
miRNA:   3'- -CGCAGCGGCaGCCU---UUuaCgCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 34461 0.72 0.852758
Target:  5'- cGCGguggcCGCCGgCGGcgAGGAUGCGGACGg -3'
miRNA:   3'- -CGCa----GCGGCaGCC--UUUUACGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 104875 0.72 0.860842
Target:  5'- cGCGcCGCCGcagCGGugGcgGCGAGCGc -3'
miRNA:   3'- -CGCaGCGGCa--GCCuuUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 124644 0.71 0.87633
Target:  5'- uCGUCGCCGUCcGAGGcgGaGAACGAg -3'
miRNA:   3'- cGCAGCGGCAGcCUUUuaCgCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 32519 0.7 0.922812
Target:  5'- cGCGUacacgcgGCUGUCGGAGgcGAUGCGcGCGc -3'
miRNA:   3'- -CGCAg------CGGCAGCCUU--UUACGCuUGUu -5'
6396 3' -50.9 NC_001847.1 + 57657 0.69 0.952609
Target:  5'- uGgG-CGCCGUCGGGcaGGcgGUGGGCAc -3'
miRNA:   3'- -CgCaGCGGCAGCCU--UUuaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 33445 0.7 0.928426
Target:  5'- gGCGUCGCgggCGUCGcuGGAgGCGAGCAu -3'
miRNA:   3'- -CGCAGCG---GCAGCcuUUUaCGCUUGUu -5'
6396 3' -50.9 NC_001847.1 + 78669 0.7 0.916938
Target:  5'- uGCGUCGCCGgcgugcgcacgCGGGcgcuGGUGcCGGGCAGc -3'
miRNA:   3'- -CGCAGCGGCa----------GCCUu---UUAC-GCUUGUU- -5'
6396 3' -50.9 NC_001847.1 + 60229 0.75 0.699854
Target:  5'- gGCGUCGUCGUCGGcGAggGCuAGCAc -3'
miRNA:   3'- -CGCAGCGGCAGCCuUUuaCGcUUGUu -5'
6396 3' -50.9 NC_001847.1 + 35067 0.69 0.938872
Target:  5'- aCGuUCGCCGccUCGGGAGGcgGCGAGCc- -3'
miRNA:   3'- cGC-AGCGGC--AGCCUUUUa-CGCUUGuu -5'
6396 3' -50.9 NC_001847.1 + 19690 0.73 0.790524
Target:  5'- uGCG-CGCCGUCGGuuuGAAUGCcGGCu- -3'
miRNA:   3'- -CGCaGCGGCAGCCu--UUUACGcUUGuu -5'
6396 3' -50.9 NC_001847.1 + 8553 0.7 0.910804
Target:  5'- uGCGUCGUCGUCG---AcgGCGAugAGg -3'
miRNA:   3'- -CGCAGCGGCAGCcuuUuaCGCUugUU- -5'
6396 3' -50.9 NC_001847.1 + 97908 0.69 0.948285
Target:  5'- cGCGUUgGCC-UCGGcAAAGUGCGuGCAGu -3'
miRNA:   3'- -CGCAG-CGGcAGCC-UUUUACGCuUGUU- -5'
6396 3' -50.9 NC_001847.1 + 42617 0.68 0.960512
Target:  5'- gGCGcCGCCG-CGGAGGGggGCG-GCAGc -3'
miRNA:   3'- -CGCaGCGGCaGCCUUUUa-CGCuUGUU- -5'
6396 3' -50.9 NC_001847.1 + 5058 0.73 0.799957
Target:  5'- cGCGUCGCgGUCGGGcgcggcccagGAcgGCGAcGCGu -3'
miRNA:   3'- -CGCAGCGgCAGCCU----------UUuaCGCU-UGUu -5'
6396 3' -50.9 NC_001847.1 + 45514 0.72 0.860842
Target:  5'- gGCGcCGCCGcCGGGcgGcGCGGACGGg -3'
miRNA:   3'- -CGCaGCGGCaGCCUuuUaCGCUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.