miRNA display CGI


Results 1 - 20 of 935 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 5' -62.3 NC_001847.1 + 31905 0.65 0.612173
Target:  5'- -gCCGCCgcagaucacggccGCGGC-CGCGgcucCGCGGCGg -3'
miRNA:   3'- caGGCGGa------------CGUCGaGCGU----GCGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 14355 0.66 0.610187
Target:  5'- --gCGCCUGCGGggaacgccgccaGCGCGCGGuCGUa -3'
miRNA:   3'- cagGCGGACGUCgag---------CGUGCGCC-GCG- -5'
6396 5' -62.3 NC_001847.1 + 56074 0.66 0.606219
Target:  5'- ---aGCCUGCgcGGCUgaGCGCGCccggGGUGCg -3'
miRNA:   3'- caggCGGACG--UCGAg-CGUGCG----CCGCG- -5'
6396 5' -62.3 NC_001847.1 + 82802 0.66 0.606219
Target:  5'- uUCUgGCCgagGCGGCgggCGaagGCGaCGGCGCg -3'
miRNA:   3'- cAGG-CGGa--CGUCGa--GCg--UGC-GCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 44 0.66 0.606219
Target:  5'- uUCCGC--GCGGCgcgUGCAUuGCGGCGg -3'
miRNA:   3'- cAGGCGgaCGUCGa--GCGUG-CGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 77802 0.66 0.606219
Target:  5'- --aUGUCUGgAGgaCGUgGCGCGGCGCg -3'
miRNA:   3'- cagGCGGACgUCgaGCG-UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 90761 0.66 0.606219
Target:  5'- -aCCGCgUcGCGGaaCGCcuGCGCGGCGa -3'
miRNA:   3'- caGGCGgA-CGUCgaGCG--UGCGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 4202 0.66 0.606219
Target:  5'- -gCCGCgCgcagGCAGCcaaaGCccuGCGCGGUGCc -3'
miRNA:   3'- caGGCG-Ga---CGUCGag--CG---UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 7405 0.66 0.606219
Target:  5'- --gCGCUcgGCAGacgGCACGCGGCGg -3'
miRNA:   3'- cagGCGGa-CGUCgagCGUGCGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 41939 0.66 0.606219
Target:  5'- -cUCGCCgucGCAGUcgCGCuCGCGGCcguGCa -3'
miRNA:   3'- caGGCGGa--CGUCGa-GCGuGCGCCG---CG- -5'
6396 5' -62.3 NC_001847.1 + 66225 0.66 0.606219
Target:  5'- -gCCGCC-GCGccgaacCUCaGCGCgGCGGCGCu -3'
miRNA:   3'- caGGCGGaCGUc-----GAG-CGUG-CGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 71951 0.66 0.606219
Target:  5'- -gCCGCgCcGCAcgUCGUgGCGCGGCGCg -3'
miRNA:   3'- caGGCG-GaCGUcgAGCG-UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 118136 0.66 0.606219
Target:  5'- -gCCGUCUGCgaGGCgCGCuGCGUccccgaggGGCGCg -3'
miRNA:   3'- caGGCGGACG--UCGaGCG-UGCG--------CCGCG- -5'
6396 5' -62.3 NC_001847.1 + 53176 0.66 0.606219
Target:  5'- -aCCGCCcGCgugaugAGCgCGCcCGCGGUGUu -3'
miRNA:   3'- caGGCGGaCG------UCGaGCGuGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 34152 0.66 0.606219
Target:  5'- -gCCGCCgcgGCGGCaccuuccgUCGCucggaGCuCGGCGCc -3'
miRNA:   3'- caGGCGGa--CGUCG--------AGCG-----UGcGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 116361 0.66 0.606219
Target:  5'- -gCCGCCgcGgAGCUCGCGCuGuCGGCc- -3'
miRNA:   3'- caGGCGGa-CgUCGAGCGUG-C-GCCGcg -5'
6396 5' -62.3 NC_001847.1 + 111010 0.66 0.606219
Target:  5'- uUgCGCgCaGCaAGUUCGCGCGCGG-GCu -3'
miRNA:   3'- cAgGCG-GaCG-UCGAGCGUGCGCCgCG- -5'
6396 5' -62.3 NC_001847.1 + 103474 0.66 0.606219
Target:  5'- -gCCGCCcuUAGCUCcucgggGCGCGCGG-GCu -3'
miRNA:   3'- caGGCGGacGUCGAG------CGUGCGCCgCG- -5'
6396 5' -62.3 NC_001847.1 + 77595 0.66 0.606219
Target:  5'- ---aGCUcgUGCAGCU-GguUGCGGCGCu -3'
miRNA:   3'- caggCGG--ACGUCGAgCguGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 114230 0.66 0.606219
Target:  5'- aGUCCuCCgUGUAgcGCUCGCcCGCGacGCGCu -3'
miRNA:   3'- -CAGGcGG-ACGU--CGAGCGuGCGC--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.