miRNA display CGI


Results 1 - 20 of 935 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 5' -62.3 NC_001847.1 + 91241 1.11 0.000482
Target:  5'- gGUCCGCCUGCAGCUCGCACGCGGCGCa -3'
miRNA:   3'- -CAGGCGGACGUCGAGCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 92249 0.89 0.01834
Target:  5'- -gCCGCCUGCAGCUCGCGCucuUGGCGCg -3'
miRNA:   3'- caGGCGGACGUCGAGCGUGc--GCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 99155 0.84 0.041882
Target:  5'- -gCCGCCUGCAGCgcggcugCGCGCGCcuuGGCGCc -3'
miRNA:   3'- caGGCGGACGUCGa------GCGUGCG---CCGCG- -5'
6396 5' -62.3 NC_001847.1 + 53713 0.83 0.046428
Target:  5'- -gCCGCCgGCGGCUCGCggggcggaucggcGCGCGGCGUa -3'
miRNA:   3'- caGGCGGaCGUCGAGCG-------------UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 61120 0.83 0.050382
Target:  5'- cGUCCGCCaGCGGCaCGCGC-CGGCGCa -3'
miRNA:   3'- -CAGGCGGaCGUCGaGCGUGcGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 99919 0.82 0.053105
Target:  5'- -gCCGCCUGCAGCacgucCGCGCGCagGGCGCc -3'
miRNA:   3'- caGGCGGACGUCGa----GCGUGCG--CCGCG- -5'
6396 5' -62.3 NC_001847.1 + 36351 0.81 0.063805
Target:  5'- --gCGCC-GCGGCgcgCGCACGCGGCGCc -3'
miRNA:   3'- cagGCGGaCGUCGa--GCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 132203 0.81 0.065494
Target:  5'- -gCCGCCgcgcuggagGCGGCcgCGCugGCGGCGCg -3'
miRNA:   3'- caGGCGGa--------CGUCGa-GCGugCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 29390 0.81 0.065494
Target:  5'- -gCCGCCgcgcuggagGCGGCcgCGCugGCGGCGCg -3'
miRNA:   3'- caGGCGGa--------CGUCGa-GCGugCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 106097 0.81 0.069004
Target:  5'- -aCCGCCUGCAGCacgucugccggCGCGCGCGGCu- -3'
miRNA:   3'- caGGCGGACGUCGa----------GCGUGCGCCGcg -5'
6396 5' -62.3 NC_001847.1 + 88527 0.81 0.069727
Target:  5'- aGUUCGCCcucguaaacgugugUGCGcguggcgugaccgcGCUCGCGCGCGGCGCg -3'
miRNA:   3'- -CAGGCGG--------------ACGU--------------CGAGCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 36438 0.8 0.084933
Target:  5'- --gCGCC-GUAGCggCGCGCGCGGCGCg -3'
miRNA:   3'- cagGCGGaCGUCGa-GCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 10893 0.79 0.089433
Target:  5'- -aCCGCCUGCGGCa-GCugGUGGCGg -3'
miRNA:   3'- caGGCGGACGUCGagCGugCGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 83628 0.79 0.094159
Target:  5'- -cCCGCCUGcCGGCgcCGCaccgGCGCGGCGCu -3'
miRNA:   3'- caGGCGGAC-GUCGa-GCG----UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 128770 0.79 0.094159
Target:  5'- -gCCGCCUucugcugccgcaGCGGCUaCGCcCGCGGCGCg -3'
miRNA:   3'- caGGCGGA------------CGUCGA-GCGuGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 68072 0.79 0.09661
Target:  5'- --gCGCCUGCGGCggggcgaaCGC-CGCGGCGCg -3'
miRNA:   3'- cagGCGGACGUCGa-------GCGuGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 34096 0.78 0.101694
Target:  5'- -gCCGCC-GUGGCUCGCGCGgCGGCGg -3'
miRNA:   3'- caGGCGGaCGUCGAGCGUGC-GCCGCg -5'
6396 5' -62.3 NC_001847.1 + 79474 0.78 0.112625
Target:  5'- -gCCGCCUGCgcgAGC-CGgaGCGCGGCGCg -3'
miRNA:   3'- caGGCGGACG---UCGaGCg-UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 102242 0.78 0.115525
Target:  5'- --gCGUCcagGC-GCUCGCGCGCGGCGCg -3'
miRNA:   3'- cagGCGGa--CGuCGAGCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 59206 0.78 0.118495
Target:  5'- -gCCGCgUGUGGCggCGCACgGCGGCGCc -3'
miRNA:   3'- caGGCGgACGUCGa-GCGUG-CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.