miRNA display CGI


Results 1 - 20 of 935 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 5' -62.3 NC_001847.1 + 44 0.66 0.606219
Target:  5'- uUCCGC--GCGGCgcgUGCAUuGCGGCGg -3'
miRNA:   3'- cAGGCGgaCGUCGa--GCGUG-CGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 284 0.67 0.547264
Target:  5'- -gCCGCCg--AGCcCGCGCG-GGCGCc -3'
miRNA:   3'- caGGCGGacgUCGaGCGUGCgCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 609 0.71 0.30364
Target:  5'- -gCCGCUccGCAGCg-GCGCGCGGCccGCg -3'
miRNA:   3'- caGGCGGa-CGUCGagCGUGCGCCG--CG- -5'
6396 5' -62.3 NC_001847.1 + 909 0.68 0.462776
Target:  5'- -gCCGCCgGCcGC-CGCcCGCcGGCGCc -3'
miRNA:   3'- caGGCGGaCGuCGaGCGuGCG-CCGCG- -5'
6396 5' -62.3 NC_001847.1 + 935 0.68 0.444922
Target:  5'- -aCCGCCgcccuCGGCcCGCGCGCGcCGCu -3'
miRNA:   3'- caGGCGGac---GUCGaGCGUGCGCcGCG- -5'
6396 5' -62.3 NC_001847.1 + 991 0.71 0.322458
Target:  5'- uUCCGCCgcgGCGGCggcacgCGCuccaccaggccgccGCccGCGGCGCg -3'
miRNA:   3'- cAGGCGGa--CGUCGa-----GCG--------------UG--CGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1097 0.74 0.209301
Target:  5'- --gCGCC-GCGGC-CGCGgGCGGCGCc -3'
miRNA:   3'- cagGCGGaCGUCGaGCGUgCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1117 0.69 0.418882
Target:  5'- -nCCGCC-GCGGCcuccaGCACcagcgGCGGCGCc -3'
miRNA:   3'- caGGCGGaCGUCGag---CGUG-----CGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1189 0.72 0.258818
Target:  5'- -aCCGCCgcggccgGCAGCUCGU-CG-GGCGCc -3'
miRNA:   3'- caGGCGGa------CGUCGAGCGuGCgCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1232 0.68 0.460074
Target:  5'- -gCCGCCcGCaggccagguacaccGGC-CGCA-GCGGCGCg -3'
miRNA:   3'- caGGCGGaCG--------------UCGaGCGUgCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1376 0.68 0.453801
Target:  5'- cGUCgagCGCCgGCAGCacgCGCugccgguacucGCGCGGCGg -3'
miRNA:   3'- -CAG---GCGGaCGUCGa--GCG-----------UGCGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 1473 0.7 0.339165
Target:  5'- -gCCGCCgcgGCAGagcCGCAgcgGCGGCGCc -3'
miRNA:   3'- caGGCGGa--CGUCga-GCGUg--CGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1514 0.69 0.418882
Target:  5'- -gCCGCgCguagGCGGCcucggCGCGCGCgaaGGCGCc -3'
miRNA:   3'- caGGCG-Ga---CGUCGa----GCGUGCG---CCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1586 0.71 0.310509
Target:  5'- --gCGCCaGCGcgccGCUCgggccaGCGCGCGGCGCa -3'
miRNA:   3'- cagGCGGaCGU----CGAG------CGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1621 0.71 0.296887
Target:  5'- cUgCGCC-GCGGCa-GCAcCGCGGCGCg -3'
miRNA:   3'- cAgGCGGaCGUCGagCGU-GCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1655 0.67 0.499566
Target:  5'- cGUgCGCCUGCccgacggccgGGC-CGuCGCGCGGC-Ca -3'
miRNA:   3'- -CAgGCGGACG----------UCGaGC-GUGCGCCGcG- -5'
6396 5' -62.3 NC_001847.1 + 1903 0.69 0.393789
Target:  5'- -gCCGCgaGCgcgugcgagAGCcCGC-CGCGGCGCg -3'
miRNA:   3'- caGGCGgaCG---------UCGaGCGuGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 1949 0.7 0.345871
Target:  5'- -gCCGCCgGC-GCUCGUccucgccGgGCGGCGCc -3'
miRNA:   3'- caGGCGGaCGuCGAGCG-------UgCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 2065 0.69 0.418882
Target:  5'- -gCCGCCgcagcggugGCGGCgagCGCcccgcggggcccGCGCGGCGg -3'
miRNA:   3'- caGGCGGa--------CGUCGa--GCG------------UGCGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 2185 0.7 0.361886
Target:  5'- -gCCGCCUG-GGCggCGUGCG-GGCGCa -3'
miRNA:   3'- caGGCGGACgUCGa-GCGUGCgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.