miRNA display CGI


Results 1 - 20 of 935 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6396 5' -62.3 NC_001847.1 + 92249 0.89 0.01834
Target:  5'- -gCCGCCUGCAGCUCGCGCucuUGGCGCg -3'
miRNA:   3'- caGGCGGACGUCGAGCGUGc--GCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 101464 0.76 0.141349
Target:  5'- -gCCGCCgcGCGGC-CGCAaggGCGGCGCg -3'
miRNA:   3'- caGGCGGa-CGUCGaGCGUg--CGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 81444 0.76 0.148586
Target:  5'- -gCCGCCgGCGGCgCGCuCGCGcGCGCa -3'
miRNA:   3'- caGGCGGaCGUCGaGCGuGCGC-CGCG- -5'
6396 5' -62.3 NC_001847.1 + 55515 0.67 0.499566
Target:  5'- -gCUGCUgGCGGCgccCGC-CGCGGgGCg -3'
miRNA:   3'- caGGCGGaCGUCGa--GCGuGCGCCgCG- -5'
6396 5' -62.3 NC_001847.1 + 36438 0.8 0.084933
Target:  5'- --gCGCC-GUAGCggCGCGCGCGGCGCg -3'
miRNA:   3'- cagGCGGaCGUCGa-GCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 10893 0.79 0.089433
Target:  5'- -aCCGCCUGCGGCa-GCugGUGGCGg -3'
miRNA:   3'- caGGCGGACGUCGagCGugCGCCGCg -5'
6396 5' -62.3 NC_001847.1 + 68072 0.79 0.09661
Target:  5'- --gCGCCUGCGGCggggcgaaCGC-CGCGGCGCg -3'
miRNA:   3'- cagGCGGACGUCGa-------GCGuGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 34096 0.78 0.101694
Target:  5'- -gCCGCC-GUGGCUCGCGCGgCGGCGg -3'
miRNA:   3'- caGGCGGaCGUCGAGCGUGC-GCCGCg -5'
6396 5' -62.3 NC_001847.1 + 23466 0.77 0.131097
Target:  5'- cGUCCGCCgccuCGGCcaUCGCGCuCGGCGCg -3'
miRNA:   3'- -CAGGCGGac--GUCG--AGCGUGcGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 38007 0.76 0.141349
Target:  5'- --aCGCauCUGCAGCUCGCGCG-GGUGCu -3'
miRNA:   3'- cagGCG--GACGUCGAGCGUGCgCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 32741 0.77 0.134436
Target:  5'- cUCCgGCCgGCGGCuauuuUCGCGgGCGGCGCu -3'
miRNA:   3'- cAGG-CGGaCGUCG-----AGCGUgCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 131573 0.77 0.127835
Target:  5'- -cCCGgaCCUGCAGCUgGCGCGCcugcugcagcGGCGCg -3'
miRNA:   3'- caGGC--GGACGUCGAgCGUGCG----------CCGCG- -5'
6396 5' -62.3 NC_001847.1 + 36351 0.81 0.063805
Target:  5'- --gCGCC-GCGGCgcgCGCACGCGGCGCc -3'
miRNA:   3'- cagGCGGaCGUCGa--GCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 87054 0.77 0.137853
Target:  5'- cUCUG-CUGCAGCUUcCGCGCGGCGUg -3'
miRNA:   3'- cAGGCgGACGUCGAGcGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 132203 0.81 0.065494
Target:  5'- -gCCGCCgcgcuggagGCGGCcgCGCugGCGGCGCg -3'
miRNA:   3'- caGGCGGa--------CGUCGa-GCGugCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 29518 0.78 0.118495
Target:  5'- uUCgGCC-GCagAGCUCGCccGCGCGGCGCg -3'
miRNA:   3'- cAGgCGGaCG--UCGAGCG--UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 132065 0.77 0.137853
Target:  5'- -gCgGCCUGCGcGCcggacgCGCugGCGGCGCa -3'
miRNA:   3'- caGgCGGACGU-CGa-----GCGugCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 44420 0.76 0.144926
Target:  5'- -gCCGCgaGCGGCUgCGUucgcgcacggggGCGCGGCGCg -3'
miRNA:   3'- caGGCGgaCGUCGA-GCG------------UGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 88527 0.81 0.069727
Target:  5'- aGUUCGCCcucguaaacgugugUGCGcguggcgugaccgcGCUCGCGCGCGGCGCg -3'
miRNA:   3'- -CAGGCGG--------------ACGU--------------CGAGCGUGCGCCGCG- -5'
6396 5' -62.3 NC_001847.1 + 83628 0.79 0.094159
Target:  5'- -cCCGCCUGcCGGCgcCGCaccgGCGCGGCGCu -3'
miRNA:   3'- caGGCGGAC-GUCGa-GCG----UGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.