Results 1 - 20 of 486 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6397 | 5' | -65.3 | NC_001847.1 | + | 98133 | 0.66 | 0.530147 |
Target: 5'- gCGgGCGUCaGCucgaGCGCGCCgCCGccgCUCGg -3' miRNA: 3'- -GCgCGCAG-CG----CGUGCGGgGGCa--GGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 104394 | 0.66 | 0.530147 |
Target: 5'- gGCGCG-CGCcaGCGCGCCgCUCGggCCa -3' miRNA: 3'- gCGCGCaGCG--CGUGCGG-GGGCagGGc -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 33087 | 0.66 | 0.530147 |
Target: 5'- uGCGCGgCGCGCaguacaGCGCUCgCGccaUCCUGg -3' miRNA: 3'- gCGCGCaGCGCG------UGCGGGgGC---AGGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 106472 | 0.66 | 0.530147 |
Target: 5'- aGCGC--CGCGUACugcuuCCCCgCGUCCCc -3' miRNA: 3'- gCGCGcaGCGCGUGc----GGGG-GCAGGGc -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 59070 | 0.66 | 0.530147 |
Target: 5'- gGCaGC-UCGgcugGCGCGCCCUCG-CCCGg -3' miRNA: 3'- gCG-CGcAGCg---CGUGCGGGGGCaGGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 24875 | 0.66 | 0.530147 |
Target: 5'- gGU-UGUCGCaGCGCGUCgaCUCGUCCCGg -3' miRNA: 3'- gCGcGCAGCG-CGUGCGG--GGGCAGGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 15048 | 0.66 | 0.530147 |
Target: 5'- aCGCGCGg-GCGCuuuauCUCCCGcCCCGc -3' miRNA: 3'- -GCGCGCagCGCGugc--GGGGGCaGGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 3659 | 0.66 | 0.530147 |
Target: 5'- aGCGC--CGCGUACugcuuCCCCgCGUCCCc -3' miRNA: 3'- gCGCGcaGCGCGUGc----GGGG-GCAGGGc -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 1581 | 0.66 | 0.530147 |
Target: 5'- gGCGCG-CGCcaGCGCGCCgCUCGggCCa -3' miRNA: 3'- gCGCGCaGCG--CGUGCGG-GGGCagGGc -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 103827 | 0.66 | 0.530147 |
Target: 5'- aCGCGCGaaaacaCGCaGCAgagccCGCuCCCCGcgCCCGc -3' miRNA: 3'- -GCGCGCa-----GCG-CGU-----GCG-GGGGCa-GGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 99935 | 0.66 | 0.525542 |
Target: 5'- cCGCGCGcagggcgcccagcCGCGCGCGCUCCuccucgaaggccgCGUgccCCCGg -3' miRNA: 3'- -GCGCGCa------------GCGCGUGCGGGG-------------GCA---GGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 108395 | 0.66 | 0.520951 |
Target: 5'- cCGCGCaccCGCGCucuACGgCCCaCGUgCCCGc -3' miRNA: 3'- -GCGCGca-GCGCG---UGCgGGG-GCA-GGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 92222 | 0.66 | 0.520951 |
Target: 5'- uGgGCGgccagcaGCGCGCGCUCUCGagCCGc -3' miRNA: 3'- gCgCGCag-----CGCGUGCGGGGGCagGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 50601 | 0.66 | 0.520951 |
Target: 5'- gCGCuGCGaCGCGgGCGCCUUCG-CCgGg -3' miRNA: 3'- -GCG-CGCaGCGCgUGCGGGGGCaGGgC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 22269 | 0.66 | 0.520951 |
Target: 5'- gCGCGCGgCGCaGCGCGCgCgUGUCggCCGu -3' miRNA: 3'- -GCGCGCaGCG-CGUGCGgGgGCAG--GGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 32435 | 0.66 | 0.520951 |
Target: 5'- gGUGCGggccuuUCGCcgcccgcccgGCGCccuGCCCCCGcCCCGc -3' miRNA: 3'- gCGCGC------AGCG----------CGUG---CGGGGGCaGGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 52411 | 0.66 | 0.520951 |
Target: 5'- aGCGCGggcgGCGCGCGCUgUCGagCUCGa -3' miRNA: 3'- gCGCGCag--CGCGUGCGGgGGCa-GGGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 73943 | 0.66 | 0.520951 |
Target: 5'- gGCGCGUaccuggCGCGCGCGCaaaaCCUuUUCCu -3' miRNA: 3'- gCGCGCA------GCGCGUGCGg---GGGcAGGGc -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 2853 | 0.66 | 0.520951 |
Target: 5'- aGCGCG-CGCGCcaGCGCCCaggCCGacgCgCGg -3' miRNA: 3'- gCGCGCaGCGCG--UGCGGG---GGCa--GgGC- -5' |
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6397 | 5' | -65.3 | NC_001847.1 | + | 101423 | 0.66 | 0.520951 |
Target: 5'- uGCGCGUCGCucccccagcucgGCcacGCGCCgCCGcgCCgCGa -3' miRNA: 3'- gCGCGCAGCG------------CG---UGCGGgGGCa-GG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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