miRNA display CGI


Results 1 - 20 of 486 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6397 5' -65.3 NC_001847.1 + 104394 0.66 0.530147
Target:  5'- gGCGCG-CGCcaGCGCGCCgCUCGggCCa -3'
miRNA:   3'- gCGCGCaGCG--CGUGCGG-GGGCagGGc -5'
6397 5' -65.3 NC_001847.1 + 52411 0.66 0.520951
Target:  5'- aGCGCGggcgGCGCGCGCUgUCGagCUCGa -3'
miRNA:   3'- gCGCGCag--CGCGUGCGGgGGCa-GGGC- -5'
6397 5' -65.3 NC_001847.1 + 32435 0.66 0.520951
Target:  5'- gGUGCGggccuuUCGCcgcccgcccgGCGCccuGCCCCCGcCCCGc -3'
miRNA:   3'- gCGCGC------AGCG----------CGUG---CGGGGGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 22269 0.66 0.520951
Target:  5'- gCGCGCGgCGCaGCGCGCgCgUGUCggCCGu -3'
miRNA:   3'- -GCGCGCaGCG-CGUGCGgGgGCAG--GGC- -5'
6397 5' -65.3 NC_001847.1 + 79492 0.66 0.520951
Target:  5'- aGCGCGgCGCGCACGUCUgugCUGUUgUCGg -3'
miRNA:   3'- gCGCGCaGCGCGUGCGGG---GGCAG-GGC- -5'
6397 5' -65.3 NC_001847.1 + 132568 0.66 0.511818
Target:  5'- cCGCgGCGgcCGCGCAgGCgCCCG-CgCCGa -3'
miRNA:   3'- -GCG-CGCa-GCGCGUgCGgGGGCaG-GGC- -5'
6397 5' -65.3 NC_001847.1 + 10066 0.66 0.511818
Target:  5'- gCGCGCGcUGCGcCGCGCgCUCGUCg-- -3'
miRNA:   3'- -GCGCGCaGCGC-GUGCGgGGGCAGggc -5'
6397 5' -65.3 NC_001847.1 + 123961 0.66 0.511818
Target:  5'- cCGCGCGgaccaGCgGCA-GCCCCagcUCCCGa -3'
miRNA:   3'- -GCGCGCag---CG-CGUgCGGGGgc-AGGGC- -5'
6397 5' -65.3 NC_001847.1 + 91575 0.66 0.511818
Target:  5'- gCGCGCGUCGCccgcggcgaaGCGCGCaaaCCgCGgCgCCGu -3'
miRNA:   3'- -GCGCGCAGCG----------CGUGCGg--GG-GCaG-GGC- -5'
6397 5' -65.3 NC_001847.1 + 73943 0.66 0.520951
Target:  5'- gGCGCGUaccuggCGCGCGCGCaaaaCCUuUUCCu -3'
miRNA:   3'- gCGCGCA------GCGCGUGCGg---GGGcAGGGc -5'
6397 5' -65.3 NC_001847.1 + 75270 0.66 0.520951
Target:  5'- aCGCGgaGgccgCGCGCGCgGCCCUCGgcgaCCGc -3'
miRNA:   3'- -GCGCg-Ca---GCGCGUG-CGGGGGCag--GGC- -5'
6397 5' -65.3 NC_001847.1 + 2853 0.66 0.520951
Target:  5'- aGCGCG-CGCGCcaGCGCCCaggCCGacgCgCGg -3'
miRNA:   3'- gCGCGCaGCGCG--UGCGGG---GGCa--GgGC- -5'
6397 5' -65.3 NC_001847.1 + 15048 0.66 0.530147
Target:  5'- aCGCGCGg-GCGCuuuauCUCCCGcCCCGc -3'
miRNA:   3'- -GCGCGCagCGCGugc--GGGGGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 1581 0.66 0.530147
Target:  5'- gGCGCG-CGCcaGCGCGCCgCUCGggCCa -3'
miRNA:   3'- gCGCGCaGCG--CGUGCGG-GGGCagGGc -5'
6397 5' -65.3 NC_001847.1 + 103827 0.66 0.530147
Target:  5'- aCGCGCGaaaacaCGCaGCAgagccCGCuCCCCGcgCCCGc -3'
miRNA:   3'- -GCGCGCa-----GCG-CGU-----GCG-GGGGCa-GGGC- -5'
6397 5' -65.3 NC_001847.1 + 3659 0.66 0.530147
Target:  5'- aGCGC--CGCGUACugcuuCCCCgCGUCCCc -3'
miRNA:   3'- gCGCGcaGCGCGUGc----GGGG-GCAGGGc -5'
6397 5' -65.3 NC_001847.1 + 99935 0.66 0.525542
Target:  5'- cCGCGCGcagggcgcccagcCGCGCGCGCUCCuccucgaaggccgCGUgccCCCGg -3'
miRNA:   3'- -GCGCGCa------------GCGCGUGCGGGG-------------GCA---GGGC- -5'
6397 5' -65.3 NC_001847.1 + 108395 0.66 0.520951
Target:  5'- cCGCGCaccCGCGCucuACGgCCCaCGUgCCCGc -3'
miRNA:   3'- -GCGCGca-GCGCG---UGCgGGG-GCA-GGGC- -5'
6397 5' -65.3 NC_001847.1 + 101423 0.66 0.520951
Target:  5'- uGCGCGUCGCucccccagcucgGCcacGCGCCgCCGcgCCgCGa -3'
miRNA:   3'- gCGCGCAGCG------------CG---UGCGGgGGCa-GG-GC- -5'
6397 5' -65.3 NC_001847.1 + 12570 0.66 0.520951
Target:  5'- aCGgGCGcCGCGUacgcgGCGCCCUCGcaCUCGu -3'
miRNA:   3'- -GCgCGCaGCGCG-----UGCGGGGGCa-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.