miRNA display CGI


Results 1 - 20 of 486 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6397 5' -65.3 NC_001847.1 + 90234 1.07 0.000676
Target:  5'- gCGCGCGUCGCGCACGCCCCCGUCCCGc -3'
miRNA:   3'- -GCGCGCAGCGCGUGCGGGGGCAGGGC- -5'
6397 5' -65.3 NC_001847.1 + 78651 0.84 0.03118
Target:  5'- gGCGCgGUCGCGCGCGCCUgCGUCgCCGg -3'
miRNA:   3'- gCGCG-CAGCGCGUGCGGGgGCAG-GGC- -5'
6397 5' -65.3 NC_001847.1 + 10422 0.84 0.033666
Target:  5'- cCGCGCGguUCGCGCugcCGCCCCCGcgCCCGg -3'
miRNA:   3'- -GCGCGC--AGCGCGu--GCGGGGGCa-GGGC- -5'
6397 5' -65.3 NC_001847.1 + 100956 0.81 0.053212
Target:  5'- gGCGgGaCGUGCGCGCCCCCGgCCCGc -3'
miRNA:   3'- gCGCgCaGCGCGUGCGGGGGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 74841 0.8 0.066761
Target:  5'- gCGCGCG-CGCGC-CGCCCgCCGcCCCGc -3'
miRNA:   3'- -GCGCGCaGCGCGuGCGGG-GGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 90698 0.79 0.070196
Target:  5'- gCGCGCGUgcCGCGCgccGCGCCCCCGUgCgCGa -3'
miRNA:   3'- -GCGCGCA--GCGCG---UGCGGGGGCAgG-GC- -5'
6397 5' -65.3 NC_001847.1 + 60445 0.79 0.073801
Target:  5'- gCGCGCGUCG-GCGCuGCCCCCGUCg-- -3'
miRNA:   3'- -GCGCGCAGCgCGUG-CGGGGGCAGggc -5'
6397 5' -65.3 NC_001847.1 + 42163 0.79 0.077583
Target:  5'- uCGCGUGUgGCuGCACGCCgCCCG-CCCGc -3'
miRNA:   3'- -GCGCGCAgCG-CGUGCGG-GGGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 32899 0.78 0.090072
Target:  5'- uGCGCGcCGCGCgcgaGCGCCUggacgCCGUCCCGc -3'
miRNA:   3'- gCGCGCaGCGCG----UGCGGG-----GGCAGGGC- -5'
6397 5' -65.3 NC_001847.1 + 623 0.77 0.097012
Target:  5'- gCGCGCGgccCGCGCcucccccCGCCCCCGaggCCCGa -3'
miRNA:   3'- -GCGCGCa--GCGCGu------GCGGGGGCa--GGGC- -5'
6397 5' -65.3 NC_001847.1 + 103436 0.77 0.097012
Target:  5'- gCGCGCGgccCGCGCcucccccCGCCCCCGaggCCCGa -3'
miRNA:   3'- -GCGCGCa--GCGCGu------GCGGGGGCa--GGGC- -5'
6397 5' -65.3 NC_001847.1 + 47875 0.77 0.101916
Target:  5'- gCGCGCGcagCGCGCGCGCgCCCGcgCgCCGg -3'
miRNA:   3'- -GCGCGCa--GCGCGUGCGgGGGCa-G-GGC- -5'
6397 5' -65.3 NC_001847.1 + 78316 0.77 0.104455
Target:  5'- gGCGCGgCGCGCGCGCCgCgGgCCCGg -3'
miRNA:   3'- gCGCGCaGCGCGUGCGGgGgCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 70957 0.76 0.112433
Target:  5'- uCGCcaGCGUCGCGCcCGCcgCCCCGUCCgCGc -3'
miRNA:   3'- -GCG--CGCAGCGCGuGCG--GGGGCAGG-GC- -5'
6397 5' -65.3 NC_001847.1 + 80581 0.76 0.114936
Target:  5'- gCGCGCGUCacggGCGCGacugcgucuucccCGCCCCCGcCCCc -3'
miRNA:   3'- -GCGCGCAG----CGCGU-------------GCGGGGGCaGGGc -5'
6397 5' -65.3 NC_001847.1 + 31545 0.76 0.118065
Target:  5'- gGCGUuuGUCGCGCGCauGCCCCCGagggCCCu -3'
miRNA:   3'- gCGCG--CAGCGCGUG--CGGGGGCa---GGGc -5'
6397 5' -65.3 NC_001847.1 + 27036 0.76 0.118065
Target:  5'- uCGC-CGUCGCGCuCGCcguacCCCCGUCCCc -3'
miRNA:   3'- -GCGcGCAGCGCGuGCG-----GGGGCAGGGc -5'
6397 5' -65.3 NC_001847.1 + 129849 0.76 0.118065
Target:  5'- uCGC-CGUCGCGCuCGCcguacCCCCGUCCCc -3'
miRNA:   3'- -GCGcGCAGCGCGuGCG-----GGGGCAGGGc -5'
6397 5' -65.3 NC_001847.1 + 88596 0.76 0.120979
Target:  5'- cCGCGCGgcuggaggaccUCGCGCGCGCCgCCGccgCCCc -3'
miRNA:   3'- -GCGCGC-----------AGCGCGUGCGGgGGCa--GGGc -5'
6397 5' -65.3 NC_001847.1 + 56839 0.75 0.129809
Target:  5'- gCGCGCGcCGCGcCGCGCCgucugcgCCCGgcggCCCGg -3'
miRNA:   3'- -GCGCGCaGCGC-GUGCGG-------GGGCa---GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.