miRNA display CGI


Results 1 - 20 of 486 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6397 5' -65.3 NC_001847.1 + 7 0.73 0.181764
Target:  5'- gCGcCGCGcCGCGCGgGCCCCCugcgacCCCGg -3'
miRNA:   3'- -GC-GCGCaGCGCGUgCGGGGGca----GGGC- -5'
6397 5' -65.3 NC_001847.1 + 115 0.67 0.424729
Target:  5'- gGCGCccCGCGCccCGgCCCCG-CCCGc -3'
miRNA:   3'- gCGCGcaGCGCGu-GCgGGGGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 294 0.73 0.190477
Target:  5'- cCGCGCGg-GCGC-CGUCCCCGcgCCCc -3'
miRNA:   3'- -GCGCGCagCGCGuGCGGGGGCa-GGGc -5'
6397 5' -65.3 NC_001847.1 + 318 0.71 0.256416
Target:  5'- cCGCcggaGCuUCGCGCuccACGCCCgCGUCCCu -3'
miRNA:   3'- -GCG----CGcAGCGCG---UGCGGGgGCAGGGc -5'
6397 5' -65.3 NC_001847.1 + 379 0.66 0.497346
Target:  5'- cCGCGCGcCGCGCGCcggaccGCgCUCCGaccgagaccgagggCCCGg -3'
miRNA:   3'- -GCGCGCaGCGCGUG------CG-GGGGCa-------------GGGC- -5'
6397 5' -65.3 NC_001847.1 + 498 0.68 0.384623
Target:  5'- gGgGCGgcCGCGCGCcaaccCCCCUGUCCgCGg -3'
miRNA:   3'- gCgCGCa-GCGCGUGc----GGGGGCAGG-GC- -5'
6397 5' -65.3 NC_001847.1 + 623 0.77 0.097012
Target:  5'- gCGCGCGgccCGCGCcucccccCGCCCCCGaggCCCGa -3'
miRNA:   3'- -GCGCGCa--GCGCGu------GCGGGGGCa--GGGC- -5'
6397 5' -65.3 NC_001847.1 + 1156 0.69 0.361793
Target:  5'- uGC-CGaugcCGCGCGCGCUCCCaGcCCCGg -3'
miRNA:   3'- gCGcGCa---GCGCGUGCGGGGG-CaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 1515 0.67 0.458551
Target:  5'- cCGCGCGUaggcggccucggCGCGCGCgaagGCgCCCGggCCGa -3'
miRNA:   3'- -GCGCGCA------------GCGCGUG----CGgGGGCagGGC- -5'
6397 5' -65.3 NC_001847.1 + 1532 0.69 0.325884
Target:  5'- gCGCGCGcUUGUGC-CGCCcaagCCCG-CCCGc -3'
miRNA:   3'- -GCGCGC-AGCGCGuGCGG----GGGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 1581 0.66 0.530147
Target:  5'- gGCGCG-CGCcaGCGCGCCgCUCGggCCa -3'
miRNA:   3'- gCGCGCaGCG--CGUGCGG-GGGCagGGc -5'
6397 5' -65.3 NC_001847.1 + 1813 0.7 0.280171
Target:  5'- uGCGCGccgagCGCGCucacguccgGCGCgCCCGUCCa- -3'
miRNA:   3'- gCGCGCa----GCGCG---------UGCGgGGGCAGGgc -5'
6397 5' -65.3 NC_001847.1 + 1998 0.69 0.364782
Target:  5'- aGCGgGUcguagagcaccaccaCGCGCACGUCCUCGgggUCCGc -3'
miRNA:   3'- gCGCgCA---------------GCGCGUGCGGGGGCa--GGGC- -5'
6397 5' -65.3 NC_001847.1 + 2073 0.66 0.511818
Target:  5'- aGCG-GUgGCGgcgaGCGCCCCgCGgggCCCGc -3'
miRNA:   3'- gCGCgCAgCGCg---UGCGGGG-GCa--GGGC- -5'
6397 5' -65.3 NC_001847.1 + 2452 0.67 0.424729
Target:  5'- cCGcCGCcUCGcCGUcccCGUCCCCGUCCCc -3'
miRNA:   3'- -GC-GCGcAGC-GCGu--GCGGGGGCAGGGc -5'
6397 5' -65.3 NC_001847.1 + 2641 0.67 0.416509
Target:  5'- cCGC-CGUCGcCGCuugcgGCGCCUUCG-CCCGg -3'
miRNA:   3'- -GCGcGCAGC-GCG-----UGCGGGGGCaGGGC- -5'
6397 5' -65.3 NC_001847.1 + 2757 0.69 0.319028
Target:  5'- gGCGCGgcgGCGCcggcgccgGCGCCCCCG-CCgGc -3'
miRNA:   3'- gCGCGCag-CGCG--------UGCGGGGGCaGGgC- -5'
6397 5' -65.3 NC_001847.1 + 2853 0.66 0.520951
Target:  5'- aGCGCG-CGCGCcaGCGCCCaggCCGacgCgCGg -3'
miRNA:   3'- gCGCGCaGCGCG--UGCGGG---GGCa--GgGC- -5'
6397 5' -65.3 NC_001847.1 + 2994 0.68 0.400363
Target:  5'- gGCGCuGgagcCGCGCGCGCUCCaccgCGUCgCGg -3'
miRNA:   3'- gCGCG-Ca---GCGCGUGCGGGG----GCAGgGC- -5'
6397 5' -65.3 NC_001847.1 + 3218 0.67 0.449959
Target:  5'- uCGCGCaGcCGCucGCGCGCCgCCCG-CgCCGu -3'
miRNA:   3'- -GCGCG-CaGCG--CGUGCGG-GGGCaG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.