miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6398 3' -52.4 NC_001847.1 + 106356 0.66 0.979674
Target:  5'- cGGCGUcCCGgcCGAGCAacgu-GUCGUCg -3'
miRNA:   3'- -CCGCGuGGU--GCUCGUguuugUAGCAG- -5'
6398 3' -52.4 NC_001847.1 + 51992 0.66 0.979674
Target:  5'- cGGCGCAUCGCGGacGCGCccGACGcCG-Cg -3'
miRNA:   3'- -CCGCGUGGUGCU--CGUGu-UUGUaGCaG- -5'
6398 3' -52.4 NC_001847.1 + 50576 0.66 0.979674
Target:  5'- uGGCGCgcaugcuguucuACCugGAGCGCugcGACG-CGg- -3'
miRNA:   3'- -CCGCG------------UGGugCUCGUGu--UUGUaGCag -5'
6398 3' -52.4 NC_001847.1 + 40872 0.66 0.979674
Target:  5'- gGGCGCGCCcaauGCGC-GugGUCGUa -3'
miRNA:   3'- -CCGCGUGGugcuCGUGuUugUAGCAg -5'
6398 3' -52.4 NC_001847.1 + 24533 0.66 0.979674
Target:  5'- cGCGCugCACGAuuuccGUGCAGAgGUUGg- -3'
miRNA:   3'- cCGCGugGUGCU-----CGUGUUUgUAGCag -5'
6398 3' -52.4 NC_001847.1 + 3527 0.66 0.979674
Target:  5'- gGGcCGUggccgacuacgGCCGCGAGCGCGgcGGCggCGUa -3'
miRNA:   3'- -CC-GCG-----------UGGUGCUCGUGU--UUGuaGCAg -5'
6398 3' -52.4 NC_001847.1 + 105034 0.66 0.979674
Target:  5'- aGGCcgccaGCGCCGCGgcgcugGGCGCGGGCGUgugguaGUCc -3'
miRNA:   3'- -CCG-----CGUGGUGC------UCGUGUUUGUAg-----CAG- -5'
6398 3' -52.4 NC_001847.1 + 22137 0.66 0.979674
Target:  5'- cGGCGUG-CugGAGCGCAAAU-UUGUa -3'
miRNA:   3'- -CCGCGUgGugCUCGUGUUUGuAGCAg -5'
6398 3' -52.4 NC_001847.1 + 123682 0.66 0.979674
Target:  5'- gGGCuCGCCACGcGCACGGuagccgcuggcGCGggGUCg -3'
miRNA:   3'- -CCGcGUGGUGCuCGUGUU-----------UGUagCAG- -5'
6398 3' -52.4 NC_001847.1 + 2221 0.66 0.979674
Target:  5'- aGGCcgccaGCGCCGCGgcgcugGGCGCGGGCGUgugguaGUCc -3'
miRNA:   3'- -CCG-----CGUGGUGC------UCGUGUUUGUAg-----CAG- -5'
6398 3' -52.4 NC_001847.1 + 40925 0.66 0.979674
Target:  5'- gGGCGCcccGCCGCGAGCuccgccGCGcGCAgCGcCu -3'
miRNA:   3'- -CCGCG---UGGUGCUCG------UGUuUGUaGCaG- -5'
6398 3' -52.4 NC_001847.1 + 105900 0.66 0.979674
Target:  5'- uGCGCgGCCGCGGggccauGCAguGGCGgaUCGUCu -3'
miRNA:   3'- cCGCG-UGGUGCU------CGUguUUGU--AGCAG- -5'
6398 3' -52.4 NC_001847.1 + 114180 0.66 0.979674
Target:  5'- cGCGCGCC-CGcuUAUAGGCGUCGa- -3'
miRNA:   3'- cCGCGUGGuGCucGUGUUUGUAGCag -5'
6398 3' -52.4 NC_001847.1 + 113294 0.66 0.979674
Target:  5'- -cCGCACCAccugcugcacCGAGCGCA-GCAUUGg- -3'
miRNA:   3'- ccGCGUGGU----------GCUCGUGUuUGUAGCag -5'
6398 3' -52.4 NC_001847.1 + 97182 0.66 0.979674
Target:  5'- cGGCGCGCUGCGuAGCgGCuuGCucgCGaUCa -3'
miRNA:   3'- -CCGCGUGGUGC-UCG-UGuuUGua-GC-AG- -5'
6398 3' -52.4 NC_001847.1 + 96656 0.66 0.979674
Target:  5'- uGCGCggggGCCgGCGGGUAC--GCGUCGUg -3'
miRNA:   3'- cCGCG----UGG-UGCUCGUGuuUGUAGCAg -5'
6398 3' -52.4 NC_001847.1 + 96629 0.66 0.979674
Target:  5'- uGCGCggggGCCgGCGGGUAC--GCGUCGUg -3'
miRNA:   3'- cCGCG----UGG-UGCUCGUGuuUGUAGCAg -5'
6398 3' -52.4 NC_001847.1 + 49157 0.66 0.979674
Target:  5'- cGGCGCgcggACCACGGuCACGcGCcgggCGUCc -3'
miRNA:   3'- -CCGCG----UGGUGCUcGUGUuUGua--GCAG- -5'
6398 3' -52.4 NC_001847.1 + 60645 0.66 0.979674
Target:  5'- aGCGCGCgGCGcaGGCGCGGcugcuGCAUCa-- -3'
miRNA:   3'- cCGCGUGgUGC--UCGUGUU-----UGUAGcag -5'
6398 3' -52.4 NC_001847.1 + 47691 0.66 0.979446
Target:  5'- cGCGCGCCGCGGggccguugagcgcGCGCAgcAGCucuUCGa- -3'
miRNA:   3'- cCGCGUGGUGCU-------------CGUGU--UUGu--AGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.