miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6398 5' -51.6 NC_001847.1 + 108028 0.66 0.989487
Target:  5'- cGCGACG-UCgaagagGCuuGGCGCGaccucGGCg -3'
miRNA:   3'- -CGCUGCuAGaaca--UGggCCGUGU-----UCG- -5'
6398 5' -51.6 NC_001847.1 + 125217 0.66 0.989487
Target:  5'- cGCGGCGAgc--GUGCUCGuccGCGgGGGCg -3'
miRNA:   3'- -CGCUGCUagaaCAUGGGC---CGUgUUCG- -5'
6398 5' -51.6 NC_001847.1 + 21915 0.66 0.989487
Target:  5'- -aGACGGagUCUg--GCuCCGaGCGCGAGCc -3'
miRNA:   3'- cgCUGCU--AGAacaUG-GGC-CGUGUUCG- -5'
6398 5' -51.6 NC_001847.1 + 32177 0.66 0.989487
Target:  5'- cGCGGCGGagCUUGgcgcgcGCgCGGCGgAGGUu -3'
miRNA:   3'- -CGCUGCUa-GAACa-----UGgGCCGUgUUCG- -5'
6398 5' -51.6 NC_001847.1 + 42139 0.66 0.989487
Target:  5'- uUGGCGAgagCUg--GCCCGGCGCcuGg -3'
miRNA:   3'- cGCUGCUa--GAacaUGGGCCGUGuuCg -5'
6398 5' -51.6 NC_001847.1 + 50583 0.66 0.989487
Target:  5'- aCGACGAggaggCcgUGUACgaGGCGCAcGCc -3'
miRNA:   3'- cGCUGCUa----Ga-ACAUGggCCGUGUuCG- -5'
6398 5' -51.6 NC_001847.1 + 67070 0.66 0.989487
Target:  5'- cGCGGCGuUCgc---CCCGcCGCAGGCg -3'
miRNA:   3'- -CGCUGCuAGaacauGGGCcGUGUUCG- -5'
6398 5' -51.6 NC_001847.1 + 109310 0.66 0.989487
Target:  5'- aGCGACGcguUCaUGcagacagccUGCCCGGC-CGAcGCg -3'
miRNA:   3'- -CGCUGCu--AGaAC---------AUGGGCCGuGUU-CG- -5'
6398 5' -51.6 NC_001847.1 + 129601 0.66 0.989487
Target:  5'- gGCGACGA-CUgGgcCgCCGuCACGAGCg -3'
miRNA:   3'- -CGCUGCUaGAaCauG-GGCcGUGUUCG- -5'
6398 5' -51.6 NC_001847.1 + 22404 0.66 0.989487
Target:  5'- cGCGGCGAgc--GUGCUCGuccGCGgGGGCg -3'
miRNA:   3'- -CGCUGCUagaaCAUGGGC---CGUgUUCG- -5'
6398 5' -51.6 NC_001847.1 + 51551 0.66 0.989487
Target:  5'- uGCGcGCGcgCgcGUGCUCGGgcuCGCGGGCg -3'
miRNA:   3'- -CGC-UGCuaGaaCAUGGGCC---GUGUUCG- -5'
6398 5' -51.6 NC_001847.1 + 35449 0.66 0.988927
Target:  5'- uGCGGCGcgacgcgGCCgCGGCGCGAGa -3'
miRNA:   3'- -CGCUGCuagaacaUGG-GCCGUGUUCg -5'
6398 5' -51.6 NC_001847.1 + 69398 0.66 0.988043
Target:  5'- cCGGCGGcCUUugcggGCCCGGCGCuguuccuGCg -3'
miRNA:   3'- cGCUGCUaGAAca---UGGGCCGUGuu-----CG- -5'
6398 5' -51.6 NC_001847.1 + 42080 0.66 0.988043
Target:  5'- uGCGGCGcAUCggccucgcgGUG-CCGGCACcguccAGGCg -3'
miRNA:   3'- -CGCUGC-UAGaa-------CAUgGGCCGUG-----UUCG- -5'
6398 5' -51.6 NC_001847.1 + 55437 0.66 0.988043
Target:  5'- aCG-CGGUCcUGcagcGCCUGGCGCcGGCg -3'
miRNA:   3'- cGCuGCUAGaACa---UGGGCCGUGuUCG- -5'
6398 5' -51.6 NC_001847.1 + 43113 0.66 0.988043
Target:  5'- gGCGcCGGcg--GUGCCCgcagacGGCGCGGGCc -3'
miRNA:   3'- -CGCuGCUagaaCAUGGG------CCGUGUUCG- -5'
6398 5' -51.6 NC_001847.1 + 22650 0.66 0.988043
Target:  5'- -gGGCGggCUUGc-CCCGG-GCGGGCg -3'
miRNA:   3'- cgCUGCuaGAACauGGGCCgUGUUCG- -5'
6398 5' -51.6 NC_001847.1 + 31751 0.66 0.988043
Target:  5'- aGCGGCGcgugGUCagcgUGcACCCGcGCGCGccGGCc -3'
miRNA:   3'- -CGCUGC----UAGa---ACaUGGGC-CGUGU--UCG- -5'
6398 5' -51.6 NC_001847.1 + 108121 0.66 0.988043
Target:  5'- cGCGACGG-CgaggGU-CCUGGCAgAAGg -3'
miRNA:   3'- -CGCUGCUaGaa--CAuGGGCCGUgUUCg -5'
6398 5' -51.6 NC_001847.1 + 10843 0.66 0.988043
Target:  5'- cGCGACGGcggCgcGUGgCCgaggcgcggcgGGCGCGGGCg -3'
miRNA:   3'- -CGCUGCUa--GaaCAUgGG-----------CCGUGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.