miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 3' -53.6 NC_001847.1 + 28401 0.66 0.956037
Target:  5'- cCGCCGcgGCGccAGCGCGggCGCGCAa---- -3'
miRNA:   3'- -GCGGU--UGU--UCGCGUa-GCGCGUagacu -5'
6399 3' -53.6 NC_001847.1 + 46587 0.66 0.956037
Target:  5'- gCGCCGcgcGCGAGCGCGgucacgccaCGCGCAc---- -3'
miRNA:   3'- -GCGGU---UGUUCGCGUa--------GCGCGUagacu -5'
6399 3' -53.6 NC_001847.1 + 38795 0.66 0.956037
Target:  5'- uGCCGGC-AGCGCGUCGCa------- -3'
miRNA:   3'- gCGGUUGuUCGCGUAGCGcguagacu -5'
6399 3' -53.6 NC_001847.1 + 131214 0.66 0.956037
Target:  5'- cCGCCGcgGCGccAGCGCGggCGCGCAa---- -3'
miRNA:   3'- -GCGGU--UGU--UCGCGUa-GCGCGUagacu -5'
6399 3' -53.6 NC_001847.1 + 123176 0.66 0.956037
Target:  5'- cCGCCAACGGcacGCGC-UCGaguCGC-UCUGGg -3'
miRNA:   3'- -GCGGUUGUU---CGCGuAGC---GCGuAGACU- -5'
6399 3' -53.6 NC_001847.1 + 79831 0.66 0.956037
Target:  5'- uGCCGGaaguGGCGac-CGCGgCGUCUGAg -3'
miRNA:   3'- gCGGUUgu--UCGCguaGCGC-GUAGACU- -5'
6399 3' -53.6 NC_001847.1 + 66503 0.66 0.956037
Target:  5'- gGCCAGC-GGCGCGguggaggCGCGCcgCc-- -3'
miRNA:   3'- gCGGUUGuUCGCGUa------GCGCGuaGacu -5'
6399 3' -53.6 NC_001847.1 + 17375 0.66 0.956037
Target:  5'- --aCAGCGGGCGCGcgGUGCGUCgUGAc -3'
miRNA:   3'- gcgGUUGUUCGCGUagCGCGUAG-ACU- -5'
6399 3' -53.6 NC_001847.1 + 85828 0.66 0.956037
Target:  5'- gGCgAAgAAGCGCGUuaugcgucgagCGCGUcgCUGGc -3'
miRNA:   3'- gCGgUUgUUCGCGUA-----------GCGCGuaGACU- -5'
6399 3' -53.6 NC_001847.1 + 106146 0.66 0.956037
Target:  5'- gCGCCAGCAcGGCGCGcUCuaGCAUg--- -3'
miRNA:   3'- -GCGGUUGU-UCGCGU-AGcgCGUAgacu -5'
6399 3' -53.6 NC_001847.1 + 134651 0.66 0.956037
Target:  5'- cCGgCAGCAGGCGCGgagGCGCGggcacccaUGAc -3'
miRNA:   3'- -GCgGUUGUUCGCGUag-CGCGUag------ACU- -5'
6399 3' -53.6 NC_001847.1 + 11530 0.66 0.956037
Target:  5'- aGCCGcCGGGUGCugCGUucGCGUCUGGa -3'
miRNA:   3'- gCGGUuGUUCGCGuaGCG--CGUAGACU- -5'
6399 3' -53.6 NC_001847.1 + 2873 0.66 0.956037
Target:  5'- gGCCGACGcgcgGGCcgccGCGcCGCGCGUCg-- -3'
miRNA:   3'- gCGGUUGU----UCG----CGUaGCGCGUAGacu -5'
6399 3' -53.6 NC_001847.1 + 121762 0.66 0.956037
Target:  5'- aCGCCGA-GAGCGCGUaGCGCucAUUUGc -3'
miRNA:   3'- -GCGGUUgUUCGCGUAgCGCG--UAGACu -5'
6399 3' -53.6 NC_001847.1 + 104117 0.66 0.956037
Target:  5'- gGCCGGCGuugccGGCGCG-CGCGCGc---- -3'
miRNA:   3'- gCGGUUGU-----UCGCGUaGCGCGUagacu -5'
6399 3' -53.6 NC_001847.1 + 101453 0.66 0.956037
Target:  5'- cCGCCGcgccGCGAGCGCc-UGCGCcUCUa- -3'
miRNA:   3'- -GCGGU----UGUUCGCGuaGCGCGuAGAcu -5'
6399 3' -53.6 NC_001847.1 + 86377 0.66 0.956037
Target:  5'- aGgCGGCGGGcCGCGgcggcgggCGCGCggCUGAg -3'
miRNA:   3'- gCgGUUGUUC-GCGUa-------GCGCGuaGACU- -5'
6399 3' -53.6 NC_001847.1 + 53132 0.66 0.956037
Target:  5'- gCGCCGACu-GCGCGgugaGCGuCAUCa-- -3'
miRNA:   3'- -GCGGUUGuuCGCGUag--CGC-GUAGacu -5'
6399 3' -53.6 NC_001847.1 + 32615 0.66 0.956037
Target:  5'- uGCCugGACGcgaucaccGGCGCggCGCGCGcUCUGc -3'
miRNA:   3'- gCGG--UUGU--------UCGCGuaGCGCGU-AGACu -5'
6399 3' -53.6 NC_001847.1 + 14651 0.66 0.956037
Target:  5'- gCGCCGcucgcuGCGAGCGgGgCGCGUGUCg-- -3'
miRNA:   3'- -GCGGU------UGUUCGCgUaGCGCGUAGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.