miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 3' -53.6 NC_001847.1 + 89467 1.1 0.00359
Target:  5'- aCGCCAACAAGCGCAUCGCGCAUCUGAc -3'
miRNA:   3'- -GCGGUUGUUCGCGUAGCGCGUAGACU- -5'
6399 3' -53.6 NC_001847.1 + 30528 0.78 0.362203
Target:  5'- uGCCGGCGAGCGCGacgucgccgagcucgUCGCGCggcuccgcggcGUCUGGg -3'
miRNA:   3'- gCGGUUGUUCGCGU---------------AGCGCG-----------UAGACU- -5'
6399 3' -53.6 NC_001847.1 + 113044 0.78 0.367161
Target:  5'- aCGCCGGCAgcagccgcAGCGCGUCGgCGCAcgUCUGc -3'
miRNA:   3'- -GCGGUUGU--------UCGCGUAGC-GCGU--AGACu -5'
6399 3' -53.6 NC_001847.1 + 48930 0.77 0.40139
Target:  5'- aGCCuGGCGGGCGCAggCGCGCGaCUGGa -3'
miRNA:   3'- gCGG-UUGUUCGCGUa-GCGCGUaGACU- -5'
6399 3' -53.6 NC_001847.1 + 62708 0.77 0.419249
Target:  5'- gGCCGGCAGGCGCGUCacucugagcacGCGCAUgccccgCUGGg -3'
miRNA:   3'- gCGGUUGUUCGCGUAG-----------CGCGUA------GACU- -5'
6399 3' -53.6 NC_001847.1 + 34372 0.77 0.428357
Target:  5'- gGCCAGCGAGCGcCAUgGCGCGgggcgacCUGGa -3'
miRNA:   3'- gCGGUUGUUCGC-GUAgCGCGUa------GACU- -5'
6399 3' -53.6 NC_001847.1 + 90011 0.76 0.475573
Target:  5'- cCGCCGGCAccucGGCGUcuGUCGCGC-UCUGu -3'
miRNA:   3'- -GCGGUUGU----UCGCG--UAGCGCGuAGACu -5'
6399 3' -53.6 NC_001847.1 + 97315 0.75 0.505115
Target:  5'- aCGgCGGCAGGCGCGUCG-GCGUCg-- -3'
miRNA:   3'- -GCgGUUGUUCGCGUAGCgCGUAGacu -5'
6399 3' -53.6 NC_001847.1 + 71572 0.75 0.515139
Target:  5'- aCGgCAGCGAGCGCAccuuUUGCGCG-CUGGc -3'
miRNA:   3'- -GCgGUUGUUCGCGU----AGCGCGUaGACU- -5'
6399 3' -53.6 NC_001847.1 + 58202 0.75 0.525242
Target:  5'- gGCCAGCAGGCGCuccggGCGgAUCUGc -3'
miRNA:   3'- gCGGUUGUUCGCGuag--CGCgUAGACu -5'
6399 3' -53.6 NC_001847.1 + 6899 0.75 0.535419
Target:  5'- gCGUCGGCGAGCGCG-CGCGCGccCUGc -3'
miRNA:   3'- -GCGGUUGUUCGCGUaGCGCGUa-GACu -5'
6399 3' -53.6 NC_001847.1 + 34145 0.75 0.535419
Target:  5'- cCGCCGcgGCGAGCGCGcUGCGCGaggcggCUGAg -3'
miRNA:   3'- -GCGGU--UGUUCGCGUaGCGCGUa-----GACU- -5'
6399 3' -53.6 NC_001847.1 + 84030 0.75 0.535419
Target:  5'- gGCCucguAC-AGCGCcUCGCGCAUCUuGAa -3'
miRNA:   3'- gCGGu---UGuUCGCGuAGCGCGUAGA-CU- -5'
6399 3' -53.6 NC_001847.1 + 52557 0.75 0.545664
Target:  5'- gCGCCGccGCGAGCGCuUCGCGCAc---- -3'
miRNA:   3'- -GCGGU--UGUUCGCGuAGCGCGUagacu -5'
6399 3' -53.6 NC_001847.1 + 78406 0.74 0.555972
Target:  5'- cCGCCGcuGCGGGCGCGcugcuggCGCGCGcgCUGAc -3'
miRNA:   3'- -GCGGU--UGUUCGCGUa------GCGCGUa-GACU- -5'
6399 3' -53.6 NC_001847.1 + 62549 0.74 0.566335
Target:  5'- gGCCAGC-AGCGCGUuuuggcccagccCGCGCAUCg-- -3'
miRNA:   3'- gCGGUUGuUCGCGUA------------GCGCGUAGacu -5'
6399 3' -53.6 NC_001847.1 + 22260 0.73 0.606102
Target:  5'- aGCCGACGAGCGCGcggcgcagcgcgCGCGUGUCg-- -3'
miRNA:   3'- gCGGUUGUUCGCGUa-----------GCGCGUAGacu -5'
6399 3' -53.6 NC_001847.1 + 125073 0.73 0.606102
Target:  5'- aGCCGACGAGCGCGcggcgcagcgcgCGCGUGUCg-- -3'
miRNA:   3'- gCGGUUGUUCGCGUa-----------GCGCGUAGacu -5'
6399 3' -53.6 NC_001847.1 + 16663 0.73 0.618741
Target:  5'- gGCgGcGCGGGCGCGUCGCGCAgccuuggCUGc -3'
miRNA:   3'- gCGgU-UGUUCGCGUAGCGCGUa------GACu -5'
6399 3' -53.6 NC_001847.1 + 43403 0.73 0.629287
Target:  5'- gGCCGACGcGCGCAgggCGCuGCAgCUGGg -3'
miRNA:   3'- gCGGUUGUuCGCGUa--GCG-CGUaGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.