miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 109073 0.66 0.546306
Target:  5'- aUCuCUGCUGCcggGCccagguugccugccgAGCGAgcaccuGGCCCGCaCCu -3'
miRNA:   3'- gAG-GACGACG---CG---------------UCGCU------CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 53878 0.66 0.542468
Target:  5'- -aCCgccGCggGgGCGGCG-GGCCC-CCCg -3'
miRNA:   3'- gaGGa--CGa-CgCGUCGCuCCGGGcGGG- -5'
6399 5' -63.7 NC_001847.1 + 81800 0.66 0.542468
Target:  5'- -aCCUGgUgGCcuacgcggagGCGGCGGGGCgCGCCg -3'
miRNA:   3'- gaGGACgA-CG----------CGUCGCUCCGgGCGGg -5'
6399 5' -63.7 NC_001847.1 + 14983 0.66 0.542468
Target:  5'- ---gUGCUGCGCaAGCuuGGCaagCGCCCc -3'
miRNA:   3'- gaggACGACGCG-UCGcuCCGg--GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 84892 0.66 0.542468
Target:  5'- -gCUaGCUGCcacCAGCGuuccaaAGGCCgGCCCg -3'
miRNA:   3'- gaGGaCGACGc--GUCGC------UCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 49479 0.66 0.542468
Target:  5'- -gCCUGC-GCGcCAGCacGGCCgCGCCa -3'
miRNA:   3'- gaGGACGaCGC-GUCGcuCCGG-GCGGg -5'
6399 5' -63.7 NC_001847.1 + 103973 0.66 0.542468
Target:  5'- gCUCCgGCaGCGCGGCcgcgcagaAGGCcaCCGCCg -3'
miRNA:   3'- -GAGGaCGaCGCGUCGc-------UCCG--GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 1121 0.66 0.542468
Target:  5'- -cCCUGC-GaCGCuGGCGAGa-CCGCCCg -3'
miRNA:   3'- gaGGACGaC-GCG-UCGCUCcgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 69025 0.66 0.542468
Target:  5'- --gCUGCUGCGguGCGucGCgCUGUCg -3'
miRNA:   3'- gagGACGACGCguCGCucCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 34513 0.66 0.542468
Target:  5'- -gCCgacGCggacgGCGcCGGCGAuGCgCCGCCCg -3'
miRNA:   3'- gaGGa--CGa----CGC-GUCGCUcCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 56824 0.66 0.542468
Target:  5'- -gCCUGgggGCGCGGgGAGGgggcggcccagCCGCCCg -3'
miRNA:   3'- gaGGACga-CGCGUCgCUCCg----------GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 118176 0.66 0.542468
Target:  5'- -cCCUGCgcuggacgGUGC-GCGAcGGCaUCGCCCc -3'
miRNA:   3'- gaGGACGa-------CGCGuCGCU-CCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 98784 0.66 0.542468
Target:  5'- -gCCgcgGCgGCGCcGCGuGGCgCGCCg -3'
miRNA:   3'- gaGGa--CGaCGCGuCGCuCCGgGCGGg -5'
6399 5' -63.7 NC_001847.1 + 80734 0.66 0.542468
Target:  5'- -gCCgagGCcaacCGCGGCGGcGCCCGCCUc -3'
miRNA:   3'- gaGGa--CGac--GCGUCGCUcCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 31897 0.66 0.542468
Target:  5'- --gCUGCUGcCGCcgccGcCGccGCCCGCCCg -3'
miRNA:   3'- gagGACGAC-GCGu---C-GCucCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 120997 0.66 0.542468
Target:  5'- -cCCUaGCgGcCGCccaGGCGcGGGcCCCGCCCa -3'
miRNA:   3'- gaGGA-CGaC-GCG---UCGC-UCC-GGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 67085 0.66 0.542468
Target:  5'- -gCCgcagGC-GCGCcGCGAGGC-CGCCg -3'
miRNA:   3'- gaGGa---CGaCGCGuCGCUCCGgGCGGg -5'
6399 5' -63.7 NC_001847.1 + 1160 0.66 0.542468
Target:  5'- gCUCCgGCaGCGCGGCcgcgcagaAGGCcaCCGCCg -3'
miRNA:   3'- -GAGGaCGaCGCGUCGc-------UCCG--GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 117326 0.66 0.542468
Target:  5'- -aCCUaGCgGCGgGGgGcGGCCuCGCCCc -3'
miRNA:   3'- gaGGA-CGaCGCgUCgCuCCGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 66524 0.66 0.54151
Target:  5'- ----aGCUGCGCGGCugGGGGCgcagcgaCCGCgCCg -3'
miRNA:   3'- gaggaCGACGCGUCG--CUCCG-------GGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.