Results 41 - 60 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6399 | 5' | -63.7 | NC_001847.1 | + | 120997 | 0.66 | 0.542468 |
Target: 5'- -cCCUaGCgGcCGCccaGGCGcGGGcCCCGCCCa -3' miRNA: 3'- gaGGA-CGaC-GCG---UCGC-UCC-GGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 31897 | 0.66 | 0.542468 |
Target: 5'- --gCUGCUGcCGCcgccGcCGccGCCCGCCCg -3' miRNA: 3'- gagGACGAC-GCGu---C-GCucCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 80734 | 0.66 | 0.542468 |
Target: 5'- -gCCgagGCcaacCGCGGCGGcGCCCGCCUc -3' miRNA: 3'- gaGGa--CGac--GCGUCGCUcCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 98784 | 0.66 | 0.542468 |
Target: 5'- -gCCgcgGCgGCGCcGCGuGGCgCGCCg -3' miRNA: 3'- gaGGa--CGaCGCGuCGCuCCGgGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 118176 | 0.66 | 0.542468 |
Target: 5'- -cCCUGCgcuggacgGUGC-GCGAcGGCaUCGCCCc -3' miRNA: 3'- gaGGACGa-------CGCGuCGCU-CCG-GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 40941 | 0.66 | 0.532913 |
Target: 5'- gCUCCgccGC-GCGCAGCGccucgaacuGCCCGCgCg -3' miRNA: 3'- -GAGGa--CGaCGCGUCGCuc-------CGGGCGgG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 13329 | 0.66 | 0.532913 |
Target: 5'- gCUCCgGCacGgGCGGCGAGcaggcGCCCGCg- -3' miRNA: 3'- -GAGGaCGa-CgCGUCGCUC-----CGGGCGgg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 74168 | 0.66 | 0.51399 |
Target: 5'- -gCCguggGCgcGCGCAGCGGGGa-CGCCa -3' miRNA: 3'- gaGGa---CGa-CGCGUCGCUCCggGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 101104 | 0.66 | 0.51399 |
Target: 5'- ----cGC-GCGCcGCGGGGCCCaucgccugGCCCa -3' miRNA: 3'- gaggaCGaCGCGuCGCUCCGGG--------CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 101452 | 0.66 | 0.51399 |
Target: 5'- -gCC-GCcGCGCcGCGAGcGCCUGCgCCu -3' miRNA: 3'- gaGGaCGaCGCGuCGCUC-CGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 88385 | 0.66 | 0.51399 |
Target: 5'- -aCCgGCcccGCGCGGCGggcGGGCgCGCCg -3' miRNA: 3'- gaGGaCGa--CGCGUCGC---UCCGgGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 123165 | 0.66 | 0.51399 |
Target: 5'- uUCCgGagacgGCGCGGCGgcgcucAGG-CCGCCCa -3' miRNA: 3'- gAGGaCga---CGCGUCGC------UCCgGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 104767 | 0.66 | 0.523419 |
Target: 5'- -gUCUGCgcccGCacCAGCGccgaGGGCCCGCCa -3' miRNA: 3'- gaGGACGa---CGc-GUCGC----UCCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 37093 | 0.66 | 0.523419 |
Target: 5'- -gCCUGa-GCGCGGagaGcGGCCCGCUg -3' miRNA: 3'- gaGGACgaCGCGUCg--CuCCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 115974 | 0.66 | 0.523419 |
Target: 5'- -gCCgUGCUGCGCgggguaacaacgGGCGcGGCCgcUGCCUa -3' miRNA: 3'- gaGG-ACGACGCG------------UCGCuCCGG--GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 85049 | 0.66 | 0.523419 |
Target: 5'- -gCC-GCccgGCGCGGCagccuuGGCCgCGCCCg -3' miRNA: 3'- gaGGaCGa--CGCGUCGcu----CCGG-GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 104384 | 0.66 | 0.523419 |
Target: 5'- ----cGCggcGCuGCAGCGGGccgcggucuacGCCCGCCCa -3' miRNA: 3'- gaggaCGa--CG-CGUCGCUC-----------CGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 110623 | 0.66 | 0.523419 |
Target: 5'- aUCgUGCaGCGC-GCGAGcCCCgacGCCCa -3' miRNA: 3'- gAGgACGaCGCGuCGCUCcGGG---CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 128454 | 0.66 | 0.523419 |
Target: 5'- -cCCUGC-GCGC-GCGcccGGCCgGCCg -3' miRNA: 3'- gaGGACGaCGCGuCGCu--CCGGgCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 22109 | 0.66 | 0.532913 |
Target: 5'- -gCCgGggGCGaCAGCG-GGCgCGCCCu -3' miRNA: 3'- gaGGaCgaCGC-GUCGCuCCGgGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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