miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 73689 0.66 0.51399
Target:  5'- --gCUGCUGCGCGaccGCcucGCCgCGCCCg -3'
miRNA:   3'- gagGACGACGCGU---CGcucCGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 125502 0.66 0.495348
Target:  5'- -cCCgGCUGCucgaGCGGCG-GGCCgGCgCg -3'
miRNA:   3'- gaGGaCGACG----CGUCGCuCCGGgCGgG- -5'
6399 5' -63.7 NC_001847.1 + 29433 0.66 0.499053
Target:  5'- -cCCcGCUcgcgcgguacucgacGCGCGGCGcggcGGCCCGCgCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCGCu---CCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 2082 0.66 0.504632
Target:  5'- ----gGCgaGCGCcccGCGGGGCCCGCgCg -3'
miRNA:   3'- gaggaCGa-CGCGu--CGCUCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 113613 0.66 0.498125
Target:  5'- -gCCaGCUugggcgcguuggcccGCGCGGCccccgccGAGGCgCGCCCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCG-------CUCCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 65457 0.66 0.504632
Target:  5'- -cCCguguagGCggGCGCGcGCgGAGGCUCGCUCu -3'
miRNA:   3'- gaGGa-----CGa-CGCGU-CG-CUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 101625 0.66 0.504632
Target:  5'- -cCCgGCgccucCGCGGCGGcGCCCGCCg -3'
miRNA:   3'- gaGGaCGac---GCGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 7369 0.66 0.51399
Target:  5'- gCUCUguUGCUGCGCcaccuGCcGGGCaagCCGCCg -3'
miRNA:   3'- -GAGG--ACGACGCGu----CGcUCCG---GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 3208 0.66 0.51399
Target:  5'- gUCCgccaGCUcGCGCAGCcgcucGcGCgCCGCCCg -3'
miRNA:   3'- gAGGa---CGA-CGCGUCGcu---C-CG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 5823 0.67 0.477018
Target:  5'- -cCCgGCcccGCGCccGGC-AGGCCCGCCUu -3'
miRNA:   3'- gaGGaCGa--CGCG--UCGcUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 3085 0.67 0.477018
Target:  5'- gUCCgGC-GCGCAggccGCGGccggcaggccgcGGCCCGCCg -3'
miRNA:   3'- gAGGaCGaCGCGU----CGCU------------CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 72688 0.67 0.46798
Target:  5'- -cCCUGCUGagGcCGGgGAGaGCggCCGCCCg -3'
miRNA:   3'- gaGGACGACg-C-GUCgCUC-CG--GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 2 0.67 0.477018
Target:  5'- cCUCCgcGCcGCGCcGCGcGGGCCC-CCUg -3'
miRNA:   3'- -GAGGa-CGaCGCGuCGC-UCCGGGcGGG- -5'
6399 5' -63.7 NC_001847.1 + 83130 0.67 0.477018
Target:  5'- cCUCCUcggcgGCcGcCGCGGCGucGGGCgCGUCCg -3'
miRNA:   3'- -GAGGA-----CGaC-GCGUCGC--UCCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 61688 0.67 0.477018
Target:  5'- ----gGCUGUacacCGGCGAGGCgCCGCUCa -3'
miRNA:   3'- gaggaCGACGc---GUCGCUCCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 8475 0.67 0.477018
Target:  5'- -gCCggggGCgGCGCucggccgggGGCGGGGCCCcuuacguggGCCCc -3'
miRNA:   3'- gaGGa---CGaCGCG---------UCGCUCCGGG---------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 118103 0.67 0.471585
Target:  5'- -cCCgaGCUGCGCguguacuucgagggcGGCGAGG-CCGUCUg -3'
miRNA:   3'- gaGGa-CGACGCG---------------UCGCUCCgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 38748 0.67 0.46798
Target:  5'- --aCUGCgaccaGCGUGGCGgcGGGCCCGUgCu -3'
miRNA:   3'- gagGACGa----CGCGUCGC--UCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 29209 0.67 0.46798
Target:  5'- gCUCCcggUGCUcucgGcCGCGGCGGgccgcGGCCUGCCg -3'
miRNA:   3'- -GAGG---ACGA----C-GCGUCGCU-----CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 76228 0.67 0.46798
Target:  5'- uUCgCUGCUGCGCAaCa---CCCGCCCg -3'
miRNA:   3'- gAG-GACGACGCGUcGcuccGGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.