Results 21 - 40 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6399 | 5' | -63.7 | NC_001847.1 | + | 120737 | 0.75 | 0.152389 |
Target: 5'- -aCCcGCUGCG-AGCGGGGCCuCGCgCCa -3' miRNA: 3'- gaGGaCGACGCgUCGCUCCGG-GCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 54044 | 0.75 | 0.156185 |
Target: 5'- gUCCUcgucgGC-GCGCGGCGAGGCcgCCGCCa -3' miRNA: 3'- gAGGA-----CGaCGCGUCGCUCCG--GGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 65863 | 0.75 | 0.141497 |
Target: 5'- -gCCUuCUGCGCGGCGAgcugacguggGGgCCGCCCa -3' miRNA: 3'- gaGGAcGACGCGUCGCU----------CCgGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 55442 | 0.75 | 0.138028 |
Target: 5'- gUCCUGCaGCGCcuggcgccGGCGGGGCgCGCgCCg -3' miRNA: 3'- gAGGACGaCGCG--------UCGCUCCGgGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 37588 | 0.74 | 0.168092 |
Target: 5'- gCUgCgGCUGCgGCGGCcgGGGGCCgGCCCg -3' miRNA: 3'- -GAgGaCGACG-CGUCG--CUCCGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 71702 | 0.74 | 0.172239 |
Target: 5'- gUCCgcguCUGCGCGGUGcgccGGCCCGCCg -3' miRNA: 3'- gAGGac--GACGCGUCGCu---CCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 88523 | 0.74 | 0.161644 |
Target: 5'- -aCCUGUgcuucaccacgcucgUGCGCcGCGAGGCCgCGCCg -3' miRNA: 3'- gaGGACG---------------ACGCGuCGCUCCGG-GCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 103683 | 0.74 | 0.172239 |
Target: 5'- cCUCCac--GCGCGGCGGcGGCCCGCgCCg -3' miRNA: 3'- -GAGGacgaCGCGUCGCU-CCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 870 | 0.74 | 0.172239 |
Target: 5'- cCUCCac--GCGCGGCGGcGGCCCGCgCCg -3' miRNA: 3'- -GAGGacgaCGCGUCGCU-CCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 82455 | 0.74 | 0.180806 |
Target: 5'- gCUCCag--GCGCGGCG-GGCCCgGCCCc -3' miRNA: 3'- -GAGGacgaCGCGUCGCuCCGGG-CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 52536 | 0.74 | 0.176476 |
Target: 5'- gCUCCaGC-GCGCGGCGcacAGGCgCCGCCg -3' miRNA: 3'- -GAGGaCGaCGCGUCGC---UCCG-GGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 74252 | 0.74 | 0.160067 |
Target: 5'- -gCCUGCUGCcgccGCuGCuGGGGCCCGCgCg -3' miRNA: 3'- gaGGACGACG----CGuCG-CUCCGGGCGgG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 29424 | 0.74 | 0.172239 |
Target: 5'- -aCCUGC-GCGcCAGCGAgcgcuggggcguGGCgCCGCCCg -3' miRNA: 3'- gaGGACGaCGC-GUCGCU------------CCG-GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 116610 | 0.73 | 0.199079 |
Target: 5'- -cUCUGCgGCGCGGaCGGcGGCgCGCCCg -3' miRNA: 3'- gaGGACGaCGCGUC-GCU-CCGgGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 83071 | 0.73 | 0.203892 |
Target: 5'- --gUUGCUG-GCGGCGAagGuGCCCGCCCa -3' miRNA: 3'- gagGACGACgCGUCGCU--C-CGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 102846 | 0.73 | 0.189749 |
Target: 5'- uUCCgcgGCgGCGUcGCGGGGCCgCGCCa -3' miRNA: 3'- gAGGa--CGaCGCGuCGCUCCGG-GCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 14318 | 0.73 | 0.19297 |
Target: 5'- gCUCCcGCUGCucGCGGUGGGGCCgggcgugguggcggCGCCUg -3' miRNA: 3'- -GAGGaCGACG--CGUCGCUCCGG--------------GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 47728 | 0.73 | 0.189749 |
Target: 5'- uUCgaGCgcgGCG-GGCGGGGcCCCGCCCg -3' miRNA: 3'- gAGgaCGa--CGCgUCGCUCC-GGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 123661 | 0.73 | 0.189749 |
Target: 5'- -gCCUGagccagaUGUGUGGCGGGGCUCGCCa -3' miRNA: 3'- gaGGACg------ACGCGUCGCUCCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 56764 | 0.73 | 0.203892 |
Target: 5'- gUCCUcgGCcaUGCGCcGCGAuuGCCCGCCCg -3' miRNA: 3'- gAGGA--CG--ACGCGuCGCUc-CGGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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