miRNA display CGI


Results 41 - 60 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 102846 0.73 0.189749
Target:  5'- uUCCgcgGCgGCGUcGCGGGGCCgCGCCa -3'
miRNA:   3'- gAGGa--CGaCGCGuCGCUCCGG-GCGGg -5'
6399 5' -63.7 NC_001847.1 + 14318 0.73 0.19297
Target:  5'- gCUCCcGCUGCucGCGGUGGGGCCgggcgugguggcggCGCCUg -3'
miRNA:   3'- -GAGGaCGACG--CGUCGCUCCGG--------------GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 56764 0.73 0.203892
Target:  5'- gUCCUcgGCcaUGCGCcGCGAuuGCCCGCCCg -3'
miRNA:   3'- gAGGA--CG--ACGCGuCGCUc-CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 113502 0.73 0.203892
Target:  5'- cCUCCgGUcGCGCccgGGCGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGaCGaCGCG---UCGCuCCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 52037 0.72 0.213821
Target:  5'- ---gUGCUaCGCgaGGCgGAGGCCCGCCCg -3'
miRNA:   3'- gaggACGAcGCG--UCG-CUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 12327 0.72 0.213821
Target:  5'- -aCCUGC-GCGCcauCGAGGuCCUGCCCg -3'
miRNA:   3'- gaGGACGaCGCGuc-GCUCC-GGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 42406 0.72 0.224162
Target:  5'- gUCCUggccugccacgcGCUGCGCGagcacGCGAGGCuCUGCCa -3'
miRNA:   3'- gAGGA------------CGACGCGU-----CGCUCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 120380 0.72 0.227346
Target:  5'- gUCCUGCuUGUGCuugaacggcgagcGCGAGGCCCGgCg -3'
miRNA:   3'- gAGGACG-ACGCGu------------CGCUCCGGGCgGg -5'
6399 5' -63.7 NC_001847.1 + 131270 0.72 0.240467
Target:  5'- gCUCCgcugggaGCUGCGCAGCcccGGCgCCGUCUa -3'
miRNA:   3'- -GAGGa------CGACGCGUCGcu-CCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 28780 0.72 0.215855
Target:  5'- -gCCUGCUGCaGCGGCGcgugcagggcugccgGGGCCacaGCUCg -3'
miRNA:   3'- gaGGACGACG-CGUCGC---------------UCCGGg--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 127344 0.72 0.213821
Target:  5'- -gCCgGCUGCcgcggcagggGCGGCGGGGCCCgaGCCUc -3'
miRNA:   3'- gaGGaCGACG----------CGUCGCUCCGGG--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 601 0.72 0.224162
Target:  5'- cCUCCgcggccGCUcCGCAGCGGcgcgcGGCCCGCgCCu -3'
miRNA:   3'- -GAGGa-----CGAcGCGUCGCU-----CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 119417 0.72 0.234925
Target:  5'- cCUCCagGUUGCGCAuCGAGGCauagaCGCCg -3'
miRNA:   3'- -GAGGa-CGACGCGUcGCUCCGg----GCGGg -5'
6399 5' -63.7 NC_001847.1 + 32330 0.72 0.213821
Target:  5'- -gCCcGCgcgGCGCGGCGcggaggGGGCCCaGCCCc -3'
miRNA:   3'- gaGGaCGa--CGCGUCGC------UCCGGG-CGGG- -5'
6399 5' -63.7 NC_001847.1 + 43637 0.72 0.224162
Target:  5'- -gCCUGCUGCaggacGCGcGCGAgggcucggguGGCCCGCCg -3'
miRNA:   3'- gaGGACGACG-----CGU-CGCU----------CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 131593 0.72 0.215855
Target:  5'- -gCCUGCUGCaGCGGCGcgugcagggcugccgGGGCCacaGCUCg -3'
miRNA:   3'- gaGGACGACG-CGUCGC---------------UCCGGg--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 20083 0.72 0.246118
Target:  5'- gCUCCcGCgGCGCGGCccGGCCaucgcuaGCCCg -3'
miRNA:   3'- -GAGGaCGaCGCGUCGcuCCGGg------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 24058 0.72 0.224162
Target:  5'- -aCCUuCUcGCGCAGCcGGGCCCagGCCCg -3'
miRNA:   3'- gaGGAcGA-CGCGUCGcUCCGGG--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 103414 0.72 0.224162
Target:  5'- cCUCCgcggccGCUcCGCAGCGGcgcgcGGCCCGCgCCu -3'
miRNA:   3'- -GAGGa-----CGAcGCGUCGCU-----CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 79989 0.72 0.246118
Target:  5'- -gCC-GCUGCGCGGCGGugacGCCCcgcGCCCg -3'
miRNA:   3'- gaGGaCGACGCGUCGCUc---CGGG---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.