Results 61 - 80 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6399 | 5' | -63.7 | NC_001847.1 | + | 79989 | 0.72 | 0.246118 |
Target: 5'- -gCC-GCUGCGCGGCGGugacGCCCcgcGCCCg -3' miRNA: 3'- gaGGaCGACGCGUCGCUc---CGGG---CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 103414 | 0.72 | 0.224162 |
Target: 5'- cCUCCgcggccGCUcCGCAGCGGcgcgcGGCCCGCgCCu -3' miRNA: 3'- -GAGGa-----CGAcGCGUCGCU-----CCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 12327 | 0.72 | 0.213821 |
Target: 5'- -aCCUGC-GCGCcauCGAGGuCCUGCCCg -3' miRNA: 3'- gaGGACGaCGCGuc-GCUCC-GGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 28780 | 0.72 | 0.215855 |
Target: 5'- -gCCUGCUGCaGCGGCGcgugcagggcugccgGGGCCacaGCUCg -3' miRNA: 3'- gaGGACGACG-CGUCGC---------------UCCGGg--CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 108733 | 0.71 | 0.251879 |
Target: 5'- -gCCgcuagGCggaUGgGCGGCGgacgacGGGCCCGCCCg -3' miRNA: 3'- gaGGa----CG---ACgCGUCGC------UCCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 114936 | 0.71 | 0.25775 |
Target: 5'- -gCUcGCguuugGCGgGGCGGGGCgCCGCCCc -3' miRNA: 3'- gaGGaCGa----CGCgUCGCUCCG-GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 102701 | 0.71 | 0.251879 |
Target: 5'- -gUgUGCUGCgGCAGCGccuGGGCcaCCGCCCc -3' miRNA: 3'- gaGgACGACG-CGUCGC---UCCG--GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 91699 | 0.71 | 0.26013 |
Target: 5'- gCUCCcGCUucgcucucgggcaccGCGCGacGCGAGGCCCagcugcagcGCCCu -3' miRNA: 3'- -GAGGaCGA---------------CGCGU--CGCUCCGGG---------CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 89910 | 0.71 | 0.25775 |
Target: 5'- -cCCgagGUUGUGCcgcGCGAGGCCgCGCUCg -3' miRNA: 3'- gaGGa--CGACGCGu--CGCUCCGG-GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 93756 | 0.71 | 0.263733 |
Target: 5'- -gCCgcgcgGCUGC-CGGCGGcGGCCCGgCCg -3' miRNA: 3'- gaGGa----CGACGcGUCGCU-CCGGGCgGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 123796 | 0.71 | 0.251879 |
Target: 5'- -gCCUGCgcggcgGCgGCAGCGgcAGGCgCCGUCCu -3' miRNA: 3'- gaGGACGa-----CG-CGUCGC--UCCG-GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 56858 | 0.71 | 0.26013 |
Target: 5'- -gUCUGCgcccggcggcccggGCGCGGCcacGGGCCCGCCg -3' miRNA: 3'- gaGGACGa-------------CGCGUCGc--UCCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 5920 | 0.71 | 0.251879 |
Target: 5'- -gCCgcuagGCggaUGgGCGGCGgacgacGGGCCCGCCCg -3' miRNA: 3'- gaGGa----CG---ACgCGUCGC------UCCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 81238 | 0.71 | 0.255977 |
Target: 5'- cCUCCgg--GCGgGGCcgucgcgaggacggGGGGCCCGCCCg -3' miRNA: 3'- -GAGGacgaCGCgUCG--------------CUCCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 56889 | 0.71 | 0.263129 |
Target: 5'- gUCCaGgUGCGCGGCGAcgucggccuccagGGCgaacCCGCCCg -3' miRNA: 3'- gAGGaCgACGCGUCGCU-------------CCG----GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 961 | 0.71 | 0.263733 |
Target: 5'- gCUCCacGCUGCGCcgGGCGucuauGcGCCgGCCCg -3' miRNA: 3'- -GAGGa-CGACGCG--UCGCu----C-CGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 73052 | 0.71 | 0.263733 |
Target: 5'- -aCCUGUacaugacGCGCGGCGA--CCCGCCCa -3' miRNA: 3'- gaGGACGa------CGCGUCGCUccGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 79013 | 0.71 | 0.263733 |
Target: 5'- -cCCggagGCUGCGCGGCGu-GCaCCGCCa -3' miRNA: 3'- gaGGa---CGACGCGUCGCucCG-GGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 90775 | 0.71 | 0.251879 |
Target: 5'- ----cGcCUGCGCGGCGAggGGCCCGUUCa -3' miRNA: 3'- gaggaC-GACGCGUCGCU--CCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 61931 | 0.71 | 0.25775 |
Target: 5'- cCUCCUccGCgucaGCgGCGGCGcGGCCCGCgCg -3' miRNA: 3'- -GAGGA--CGa---CG-CGUCGCuCCGGGCGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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