miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 38868 0.75 0.145046
Target:  5'- -aCCUGCU-CGCAGUGGGGCaagGCCCa -3'
miRNA:   3'- gaGGACGAcGCGUCGCUCCGgg-CGGG- -5'
6399 5' -63.7 NC_001847.1 + 128774 0.75 0.148676
Target:  5'- cCUUCUGCUGcCGCAGCGGcuacGCCCGCg- -3'
miRNA:   3'- -GAGGACGAC-GCGUCGCUc---CGGGCGgg -5'
6399 5' -63.7 NC_001847.1 + 120737 0.75 0.152389
Target:  5'- -aCCcGCUGCG-AGCGGGGCCuCGCgCCa -3'
miRNA:   3'- gaGGaCGACGCgUCGCUCCGG-GCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 54044 0.75 0.156185
Target:  5'- gUCCUcgucgGC-GCGCGGCGAGGCcgCCGCCa -3'
miRNA:   3'- gAGGA-----CGaCGCGUCGCUCCG--GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 74252 0.74 0.160067
Target:  5'- -gCCUGCUGCcgccGCuGCuGGGGCCCGCgCg -3'
miRNA:   3'- gaGGACGACG----CGuCG-CUCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 88523 0.74 0.161644
Target:  5'- -aCCUGUgcuucaccacgcucgUGCGCcGCGAGGCCgCGCCg -3'
miRNA:   3'- gaGGACG---------------ACGCGuCGCUCCGG-GCGGg -5'
6399 5' -63.7 NC_001847.1 + 37588 0.74 0.168092
Target:  5'- gCUgCgGCUGCgGCGGCcgGGGGCCgGCCCg -3'
miRNA:   3'- -GAgGaCGACG-CGUCG--CUCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 103683 0.74 0.172239
Target:  5'- cCUCCac--GCGCGGCGGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGacgaCGCGUCGCU-CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 71702 0.74 0.172239
Target:  5'- gUCCgcguCUGCGCGGUGcgccGGCCCGCCg -3'
miRNA:   3'- gAGGac--GACGCGUCGCu---CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 870 0.74 0.172239
Target:  5'- cCUCCac--GCGCGGCGGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGacgaCGCGUCGCU-CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 29424 0.74 0.172239
Target:  5'- -aCCUGC-GCGcCAGCGAgcgcuggggcguGGCgCCGCCCg -3'
miRNA:   3'- gaGGACGaCGC-GUCGCU------------CCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 52536 0.74 0.176476
Target:  5'- gCUCCaGC-GCGCGGCGcacAGGCgCCGCCg -3'
miRNA:   3'- -GAGGaCGaCGCGUCGC---UCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 82455 0.74 0.180806
Target:  5'- gCUCCag--GCGCGGCG-GGCCCgGCCCc -3'
miRNA:   3'- -GAGGacgaCGCGUCGCuCCGGG-CGGG- -5'
6399 5' -63.7 NC_001847.1 + 45260 0.73 0.18523
Target:  5'- -gCCgGCgugaGCGCGGCGAaGCCCGCCg -3'
miRNA:   3'- gaGGaCGa---CGCGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 55511 0.73 0.189749
Target:  5'- -cCCUGCUGC-UGGCGGcGCCCGCCg -3'
miRNA:   3'- gaGGACGACGcGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 123661 0.73 0.189749
Target:  5'- -gCCUGagccagaUGUGUGGCGGGGCUCGCCa -3'
miRNA:   3'- gaGGACg------ACGCGUCGCUCCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 102846 0.73 0.189749
Target:  5'- uUCCgcgGCgGCGUcGCGGGGCCgCGCCa -3'
miRNA:   3'- gAGGa--CGaCGCGuCGCUCCGG-GCGGg -5'
6399 5' -63.7 NC_001847.1 + 47728 0.73 0.189749
Target:  5'- uUCgaGCgcgGCG-GGCGGGGcCCCGCCCg -3'
miRNA:   3'- gAGgaCGa--CGCgUCGCUCC-GGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 14318 0.73 0.19297
Target:  5'- gCUCCcGCUGCucGCGGUGGGGCCgggcgugguggcggCGCCUg -3'
miRNA:   3'- -GAGGaCGACG--CGUCGCUCCGG--------------GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 116610 0.73 0.199079
Target:  5'- -cUCUGCgGCGCGGaCGGcGGCgCGCCCg -3'
miRNA:   3'- gaGGACGaCGCGUC-GCU-CCGgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.