miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 131270 0.72 0.240467
Target:  5'- gCUCCgcugggaGCUGCGCAGCcccGGCgCCGUCUa -3'
miRNA:   3'- -GAGGa------CGACGCGUCGcu-CCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 29390 0.72 0.246118
Target:  5'- --gCUGCcGCGC-GCGAGGCCCuCCUa -3'
miRNA:   3'- gagGACGaCGCGuCGCUCCGGGcGGG- -5'
6399 5' -63.7 NC_001847.1 + 20083 0.72 0.246118
Target:  5'- gCUCCcGCgGCGCGGCccGGCCaucgcuaGCCCg -3'
miRNA:   3'- -GAGGaCGaCGCGUCGcuCCGGg------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 79989 0.72 0.246118
Target:  5'- -gCC-GCUGCGCGGCGGugacGCCCcgcGCCCg -3'
miRNA:   3'- gaGGaCGACGCGUCGCUc---CGGG---CGGG- -5'
6399 5' -63.7 NC_001847.1 + 108733 0.71 0.251879
Target:  5'- -gCCgcuagGCggaUGgGCGGCGgacgacGGGCCCGCCCg -3'
miRNA:   3'- gaGGa----CG---ACgCGUCGC------UCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 90775 0.71 0.251879
Target:  5'- ----cGcCUGCGCGGCGAggGGCCCGUUCa -3'
miRNA:   3'- gaggaC-GACGCGUCGCU--CCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 102701 0.71 0.251879
Target:  5'- -gUgUGCUGCgGCAGCGccuGGGCcaCCGCCCc -3'
miRNA:   3'- gaGgACGACG-CGUCGC---UCCG--GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 5920 0.71 0.251879
Target:  5'- -gCCgcuagGCggaUGgGCGGCGgacgacGGGCCCGCCCg -3'
miRNA:   3'- gaGGa----CG---ACgCGUCGC------UCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 123796 0.71 0.251879
Target:  5'- -gCCUGCgcggcgGCgGCAGCGgcAGGCgCCGUCCu -3'
miRNA:   3'- gaGGACGa-----CG-CGUCGC--UCCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 81238 0.71 0.255977
Target:  5'- cCUCCgg--GCGgGGCcgucgcgaggacggGGGGCCCGCCCg -3'
miRNA:   3'- -GAGGacgaCGCgUCG--------------CUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 61931 0.71 0.25775
Target:  5'- cCUCCUccGCgucaGCgGCGGCGcGGCCCGCgCg -3'
miRNA:   3'- -GAGGA--CGa---CG-CGUCGCuCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 114936 0.71 0.25775
Target:  5'- -gCUcGCguuugGCGgGGCGGGGCgCCGCCCc -3'
miRNA:   3'- gaGGaCGa----CGCgUCGCUCCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 89910 0.71 0.25775
Target:  5'- -cCCgagGUUGUGCcgcGCGAGGCCgCGCUCg -3'
miRNA:   3'- gaGGa--CGACGCGu--CGCUCCGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 56858 0.71 0.26013
Target:  5'- -gUCUGCgcccggcggcccggGCGCGGCcacGGGCCCGCCg -3'
miRNA:   3'- gaGGACGa-------------CGCGUCGc--UCCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 91699 0.71 0.26013
Target:  5'- gCUCCcGCUucgcucucgggcaccGCGCGacGCGAGGCCCagcugcagcGCCCu -3'
miRNA:   3'- -GAGGaCGA---------------CGCGU--CGCUCCGGG---------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 56889 0.71 0.263129
Target:  5'- gUCCaGgUGCGCGGCGAcgucggccuccagGGCgaacCCGCCCg -3'
miRNA:   3'- gAGGaCgACGCGUCGCU-------------CCG----GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 79013 0.71 0.263733
Target:  5'- -cCCggagGCUGCGCGGCGu-GCaCCGCCa -3'
miRNA:   3'- gaGGa---CGACGCGUCGCucCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 961 0.71 0.263733
Target:  5'- gCUCCacGCUGCGCcgGGCGucuauGcGCCgGCCCg -3'
miRNA:   3'- -GAGGa-CGACGCG--UCGCu----C-CGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 73052 0.71 0.263733
Target:  5'- -aCCUGUacaugacGCGCGGCGA--CCCGCCCa -3'
miRNA:   3'- gaGGACGa------CGCGUCGCUccGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 93756 0.71 0.263733
Target:  5'- -gCCgcgcgGCUGC-CGGCGGcGGCCCGgCCg -3'
miRNA:   3'- gaGGa----CGACGcGUCGCU-CCGGGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.