miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 79013 0.71 0.263733
Target:  5'- -cCCggagGCUGCGCGGCGu-GCaCCGCCa -3'
miRNA:   3'- gaGGa---CGACGCGUCGCucCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 31957 0.71 0.269828
Target:  5'- -gCCUGCcGCgGCGGCGgcGGGCCCcguggacgccGCCCu -3'
miRNA:   3'- gaGGACGaCG-CGUCGC--UCCGGG----------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 121000 0.71 0.276036
Target:  5'- -gCCgccGCUGCGCAGCcggccgGAGacacGCCCGCUCg -3'
miRNA:   3'- gaGGa--CGACGCGUCG------CUC----CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 42025 0.7 0.288793
Target:  5'- -gCCgUGCcgGCGCGGCGccuuuauaGCCCGCCCc -3'
miRNA:   3'- gaGG-ACGa-CGCGUCGCuc------CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 48187 0.7 0.295343
Target:  5'- gUCCUGCUGUGCcGCGccggcGGCCaggGCCg -3'
miRNA:   3'- gAGGACGACGCGuCGCu----CCGGg--CGGg -5'
6399 5' -63.7 NC_001847.1 + 68954 0.7 0.295343
Target:  5'- cCUCCaGCcagGCGUccAGCGcGGCCCGCgCg -3'
miRNA:   3'- -GAGGaCGa--CGCG--UCGCuCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 742 0.7 0.302009
Target:  5'- uUCCcGC-GgGCcccccuagGGCGAGGCCgGCCCg -3'
miRNA:   3'- gAGGaCGaCgCG--------UCGCUCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 104716 0.7 0.302009
Target:  5'- -gCC-GCgaGCGCGuGCGAGaGCCCGCCg -3'
miRNA:   3'- gaGGaCGa-CGCGU-CGCUC-CGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 103555 0.7 0.302009
Target:  5'- uUCCcGC-GgGCcccccuagGGCGAGGCCgGCCCg -3'
miRNA:   3'- gAGGaCGaCgCG--------UCGCUCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 1903 0.7 0.302009
Target:  5'- -gCC-GCgaGCGCGuGCGAGaGCCCGCCg -3'
miRNA:   3'- gaGGaCGa-CGCGU-CGCUC-CGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 100475 0.7 0.30879
Target:  5'- cCUCCUGCcgcUGCGCGGCcgcccccucGGCgCGCCg -3'
miRNA:   3'- -GAGGACG---ACGCGUCGcu-------CCGgGCGGg -5'
6399 5' -63.7 NC_001847.1 + 53090 0.7 0.30879
Target:  5'- gCUCa-GCguucgGCGgGGCGGcGGCCCGCCa -3'
miRNA:   3'- -GAGgaCGa----CGCgUCGCU-CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 28490 0.7 0.315686
Target:  5'- --gCUGCUGaCGCcuucuGGCGAGGCgUgGCCCg -3'
miRNA:   3'- gagGACGAC-GCG-----UCGCUCCG-GgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 77740 0.7 0.315686
Target:  5'- cCUCCaGCUcCGCgAGCGGGaCCCGCCg -3'
miRNA:   3'- -GAGGaCGAcGCG-UCGCUCcGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 86747 0.7 0.315686
Target:  5'- gUCCcGCUuuGCcGcCGAGGCCCgGCCCg -3'
miRNA:   3'- gAGGaCGAcgCGuC-GCUCCGGG-CGGG- -5'
6399 5' -63.7 NC_001847.1 + 21877 0.7 0.315686
Target:  5'- --gCUGCggcGCGCuGcCGAGGCCgaGCCCg -3'
miRNA:   3'- gagGACGa--CGCGuC-GCUCCGGg-CGGG- -5'
6399 5' -63.7 NC_001847.1 + 131303 0.7 0.315686
Target:  5'- --gCUGCUGaCGCcuucuGGCGAGGCgUgGCCCg -3'
miRNA:   3'- gagGACGAC-GCG-----UCGCUCCG-GgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 101361 0.7 0.315686
Target:  5'- --gCUGCaUGCGCGcgcuugcgccGCGGGGgCUGCCCg -3'
miRNA:   3'- gagGACG-ACGCGU----------CGCUCCgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 18662 0.7 0.315686
Target:  5'- aUCCggcgGgaGUGCAgguacGCGAGGCCCcgcagcacgGCCCg -3'
miRNA:   3'- gAGGa---CgaCGCGU-----CGCUCCGGG---------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 31207 0.7 0.318477
Target:  5'- gCUCUcGCUgagggcgcggcguggGCGCgcgaaAGCGGGGCgCGCCCg -3'
miRNA:   3'- -GAGGaCGA---------------CGCG-----UCGCUCCGgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.