miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 88385 0.66 0.51399
Target:  5'- -aCCgGCcccGCGCGGCGggcGGGCgCGCCg -3'
miRNA:   3'- gaGGaCGa--CGCGUCGC---UCCGgGCGGg -5'
6399 5' -63.7 NC_001847.1 + 7369 0.66 0.51399
Target:  5'- gCUCUguUGCUGCGCcaccuGCcGGGCaagCCGCCg -3'
miRNA:   3'- -GAGG--ACGACGCGu----CGcUCCG---GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 8066 0.66 0.51399
Target:  5'- -gCCcGC-GCGCAGaggGGGGCaCCGCCg -3'
miRNA:   3'- gaGGaCGaCGCGUCg--CUCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 88831 0.66 0.51399
Target:  5'- -gCCgUGCUGCGCucGGCGcuacGGCUgGCCg -3'
miRNA:   3'- gaGG-ACGACGCG--UCGCu---CCGGgCGGg -5'
6399 5' -63.7 NC_001847.1 + 123165 0.66 0.51399
Target:  5'- uUCCgGagacgGCGCGGCGgcgcucAGG-CCGCCCa -3'
miRNA:   3'- gAGGaCga---CGCGUCGC------UCCgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 26496 0.66 0.513052
Target:  5'- gUCCgcgGCcccgGCcacuucuGCAGCGucGCCCGCCg -3'
miRNA:   3'- gAGGa--CGa---CG-------CGUCGCucCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 60329 0.66 0.513052
Target:  5'- -aCCUGCUcGCGC-GUGAGGaCgagcucuccuucgUCGCCCa -3'
miRNA:   3'- gaGGACGA-CGCGuCGCUCC-G-------------GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 45797 0.66 0.513052
Target:  5'- gCUCCgaaGC-GCGCaaagcccGGCGGGaGCugCCGCCCg -3'
miRNA:   3'- -GAGGa--CGaCGCG-------UCGCUC-CG--GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 35605 0.66 0.511175
Target:  5'- -aCCUGCUGCGCaucacgccgccgccGGCGgcgcugGGGCCagCGCUg -3'
miRNA:   3'- gaGGACGACGCG--------------UCGC------UCCGG--GCGGg -5'
6399 5' -63.7 NC_001847.1 + 101625 0.66 0.504632
Target:  5'- -cCCgGCgccucCGCGGCGGcGCCCGCCg -3'
miRNA:   3'- gaGGaCGac---GCGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 60641 0.66 0.504632
Target:  5'- gUCCaGC-GCGCGGCGcAGGCgCGgCUg -3'
miRNA:   3'- gAGGaCGaCGCGUCGC-UCCGgGCgGG- -5'
6399 5' -63.7 NC_001847.1 + 65457 0.66 0.504632
Target:  5'- -cCCguguagGCggGCGCGcGCgGAGGCUCGCUCu -3'
miRNA:   3'- gaGGa-----CGa-CGCGU-CG-CUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 104895 0.66 0.504632
Target:  5'- ----gGCgaGCGCcccGCGGGGCCCGCgCg -3'
miRNA:   3'- gaggaCGa-CGCGu--CGCUCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 2153 0.66 0.504632
Target:  5'- ----cGCUGCGCAGCaccAGGUCucgcagCGCCCg -3'
miRNA:   3'- gaggaCGACGCGUCGc--UCCGG------GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 2082 0.66 0.504632
Target:  5'- ----gGCgaGCGCcccGCGGGGCCCGCgCg -3'
miRNA:   3'- gaggaCGa-CGCGu--CGCUCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 77364 0.66 0.504632
Target:  5'- -gCCgUGCgacGCGUGGCGccGGcGCCCGCUCu -3'
miRNA:   3'- gaGG-ACGa--CGCGUCGC--UC-CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 70212 0.66 0.504632
Target:  5'- --gCUGCUGCGC-GUGcugcuggagaAGGCgCCGCCg -3'
miRNA:   3'- gagGACGACGCGuCGC----------UCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 84521 0.66 0.501839
Target:  5'- uCUCCUuagcgguaugguugGCggGCGgGGCGGGGCgUGCgCCu -3'
miRNA:   3'- -GAGGA--------------CGa-CGCgUCGCUCCGgGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 29433 0.66 0.499053
Target:  5'- -cCCcGCUcgcgcgguacucgacGCGCGGCGcggcGGCCCGCgCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCGCu---CCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 132246 0.66 0.499053
Target:  5'- -cCCcGCUcgcgcgguacucgacGCGCGGCGcggcGGCCCGCgCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCGCu---CCGGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.