miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 2 0.67 0.477018
Target:  5'- cCUCCgcGCcGCGCcGCGcGGGCCC-CCUg -3'
miRNA:   3'- -GAGGa-CGaCGCGuCGC-UCCGGGcGGG- -5'
6399 5' -63.7 NC_001847.1 + 67 0.68 0.390961
Target:  5'- uUUCg---GCGCGGCGggcccGGGCCCGCUCu -3'
miRNA:   3'- gAGGacgaCGCGUCGC-----UCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 349 0.78 0.094603
Target:  5'- cCUCCcggGCUucGCGCccCGGGGCCCGCCCc -3'
miRNA:   3'- -GAGGa--CGA--CGCGucGCUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 506 0.66 0.495348
Target:  5'- -gCCUGCUGC-CGGCcc-GCCCccaGCCCa -3'
miRNA:   3'- gaGGACGACGcGUCGcucCGGG---CGGG- -5'
6399 5' -63.7 NC_001847.1 + 571 0.66 0.523419
Target:  5'- -aCCUGcCUG-GCGGCGAcgaGGCCgucuuuguguccUGCCCg -3'
miRNA:   3'- gaGGAC-GACgCGUCGCU---CCGG------------GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 601 0.72 0.224162
Target:  5'- cCUCCgcggccGCUcCGCAGCGGcgcgcGGCCCGCgCCu -3'
miRNA:   3'- -GAGGa-----CGAcGCGUCGCU-----CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 742 0.7 0.302009
Target:  5'- uUCCcGC-GgGCcccccuagGGCGAGGCCgGCCCg -3'
miRNA:   3'- gAGGaCGaCgCG--------UCGCUCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 870 0.74 0.172239
Target:  5'- cCUCCac--GCGCGGCGGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGacgaCGCGUCGCU-CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 961 0.71 0.263733
Target:  5'- gCUCCacGCUGCGCcgGGCGucuauGcGCCgGCCCg -3'
miRNA:   3'- -GAGGa-CGACGCG--UCGCu----C-CGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 1121 0.66 0.542468
Target:  5'- -cCCUGC-GaCGCuGGCGAGa-CCGCCCg -3'
miRNA:   3'- gaGGACGaC-GCG-UCGCUCcgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 1160 0.66 0.542468
Target:  5'- gCUCCgGCaGCGCGGCcgcgcagaAGGCcaCCGCCg -3'
miRNA:   3'- -GAGGaCGaCGCGUCGc-------UCCG--GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 1903 0.7 0.302009
Target:  5'- -gCC-GCgaGCGCGuGCGAGaGCCCGCCg -3'
miRNA:   3'- gaGGaCGa-CGCGU-CGCUC-CGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 2082 0.66 0.504632
Target:  5'- ----gGCgaGCGCcccGCGGGGCCCGCgCg -3'
miRNA:   3'- gaggaCGa-CGCGu--CGCUCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 2153 0.66 0.504632
Target:  5'- ----cGCUGCGCAGCaccAGGUCucgcagCGCCCg -3'
miRNA:   3'- gaggaCGACGCGUCGc--UCCGG------GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 2705 0.67 0.477018
Target:  5'- cCUCCaGCuUGCGCuuGCGAa-CCUGCCCc -3'
miRNA:   3'- -GAGGaCG-ACGCGu-CGCUccGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 2749 0.66 0.532913
Target:  5'- -cCCgGCccgGCGCGGCGGcGCCgGCgCCg -3'
miRNA:   3'- gaGGaCGa--CGCGUCGCUcCGGgCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 3085 0.67 0.477018
Target:  5'- gUCCgGC-GCGCAggccGCGGccggcaggccgcGGCCCGCCg -3'
miRNA:   3'- gAGGaCGaCGCGU----CGCU------------CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 3154 0.68 0.399106
Target:  5'- -gCCgGCgGCGCGGCG-GGC-CGCCUc -3'
miRNA:   3'- gaGGaCGaCGCGUCGCuCCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 3208 0.66 0.51399
Target:  5'- gUCCgccaGCUcGCGCAGCcgcucGcGCgCCGCCCg -3'
miRNA:   3'- gAGGa---CGA-CGCGUCGcu---C-CG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 3303 0.67 0.459031
Target:  5'- gCUCg-GCgaGCGCGGCGcGGGCgCCGCUg -3'
miRNA:   3'- -GAGgaCGa-CGCGUCGC-UCCG-GGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.