miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 4618 0.67 0.477018
Target:  5'- -gCCaGCUcgGCGCGG-GcGGCCCGCCg -3'
miRNA:   3'- gaGGaCGA--CGCGUCgCuCCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 5351 0.67 0.459031
Target:  5'- --aCUGgUcGCGCGGCGcGGCCgGgCCCa -3'
miRNA:   3'- gagGACgA-CGCGUCGCuCCGGgC-GGG- -5'
6399 5' -63.7 NC_001847.1 + 5823 0.67 0.477018
Target:  5'- -cCCgGCcccGCGCccGGC-AGGCCCGCCUu -3'
miRNA:   3'- gaGGaCGa--CGCG--UCGcUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 5884 0.67 0.450173
Target:  5'- --gCUGC-GCGCAGgGcGGCCgCGCCg -3'
miRNA:   3'- gagGACGaCGCGUCgCuCCGG-GCGGg -5'
6399 5' -63.7 NC_001847.1 + 5920 0.71 0.251879
Target:  5'- -gCCgcuagGCggaUGgGCGGCGgacgacGGGCCCGCCCg -3'
miRNA:   3'- gaGGa----CG---ACgCGUCGC------UCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 6110 0.66 0.532913
Target:  5'- -gCCcGCgagGCGCGgcGCGAGcGCCuCGCCg -3'
miRNA:   3'- gaGGaCGa--CGCGU--CGCUC-CGG-GCGGg -5'
6399 5' -63.7 NC_001847.1 + 6340 0.67 0.486142
Target:  5'- -gCCUGC-GCGCccGCcc-GCCCGCCCu -3'
miRNA:   3'- gaGGACGaCGCGu-CGcucCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 7369 0.66 0.51399
Target:  5'- gCUCUguUGCUGCGCcaccuGCcGGGCaagCCGCCg -3'
miRNA:   3'- -GAGG--ACGACGCGu----CGcUCCG---GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 8064 0.68 0.399106
Target:  5'- uUUUUGCgccaGCGGgGGGGCCUGUCCa -3'
miRNA:   3'- gAGGACGacg-CGUCgCUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 8066 0.66 0.51399
Target:  5'- -gCCcGC-GCGCAGaggGGGGCaCCGCCg -3'
miRNA:   3'- gaGGaCGaCGCGUCg--CUCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 8475 0.67 0.477018
Target:  5'- -gCCggggGCgGCGCucggccgggGGCGGGGCCCcuuacguggGCCCc -3'
miRNA:   3'- gaGGa---CGaCGCG---------UCGCUCCGGG---------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 9082 0.67 0.459031
Target:  5'- --gCUGCUacGCGC-GCGGGGUgCCGCUCu -3'
miRNA:   3'- gagGACGA--CGCGuCGCUCCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 9618 0.68 0.399106
Target:  5'- -aCCguaGCUGCGCccgccgccGCGccGGCCCGCCg -3'
miRNA:   3'- gaGGa--CGACGCGu-------CGCu-CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 10147 0.67 0.441411
Target:  5'- --gCUGCUGCaGCucucgcccgAGC-AGGCCgGCCCg -3'
miRNA:   3'- gagGACGACG-CG---------UCGcUCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 10371 0.67 0.45459
Target:  5'- -cCCUGCUcgggucgccgcuCGCGGCGGggccgcuuuaugacGGCCCGUCCc -3'
miRNA:   3'- gaGGACGAc-----------GCGUCGCU--------------CCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 10689 0.73 0.203892
Target:  5'- cCUCCgGUcGCGCccgGGCGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGaCGaCGCG---UCGCuCCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 11467 0.7 0.329825
Target:  5'- -aCCgUGC-GCGUGGCGAGcCCCGCCa -3'
miRNA:   3'- gaGG-ACGaCGCGUCGCUCcGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 11576 0.67 0.477018
Target:  5'- -cCCcGCU-CGCGGCGGccccGGCCCaaGCCCc -3'
miRNA:   3'- gaGGaCGAcGCGUCGCU----CCGGG--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 12327 0.72 0.213821
Target:  5'- -aCCUGC-GCGCcauCGAGGuCCUGCCCg -3'
miRNA:   3'- gaGGACGaCGCGuc-GCUCC-GGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 13233 0.67 0.459031
Target:  5'- gCUCC-GCgaugGC-CAGCGGGGCCaCGCg- -3'
miRNA:   3'- -GAGGaCGa---CGcGUCGCUCCGG-GCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.