miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 22109 0.66 0.532913
Target:  5'- -gCCgGggGCGaCAGCG-GGCgCGCCCu -3'
miRNA:   3'- gaGGaCgaCGC-GUCGCuCCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 22163 0.7 0.329825
Target:  5'- ----aGCcgGCGCAGCG-GGCCgGCCUg -3'
miRNA:   3'- gaggaCGa-CGCGUCGCuCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 22579 0.69 0.375001
Target:  5'- ----aGCggGCGCcccggGGCaGGGCCCGCCCg -3'
miRNA:   3'- gaggaCGa-CGCG-----UCGcUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 24058 0.72 0.224162
Target:  5'- -aCCUuCUcGCGCAGCcGGGCCCagGCCCg -3'
miRNA:   3'- gaGGAcGA-CGCGUCGcUCCGGG--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 26495 0.68 0.390961
Target:  5'- -gCCUGgUGCaaGGCG-GGCCUGCCg -3'
miRNA:   3'- gaGGACgACGcgUCGCuCCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 26496 0.66 0.513052
Target:  5'- gUCCgcgGCcccgGCcacuucuGCAGCGucGCCCGCCg -3'
miRNA:   3'- gAGGa--CGa---CG-------CGUCGCucCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 26792 0.66 0.523419
Target:  5'- cCUCCUGCgcgcCGCAGaCGAcGGCCgugaCGCUg -3'
miRNA:   3'- -GAGGACGac--GCGUC-GCU-CCGG----GCGGg -5'
6399 5' -63.7 NC_001847.1 + 27148 0.66 0.532913
Target:  5'- gUCCggGggGCGCAgccGCGGcGGCCaGCCCa -3'
miRNA:   3'- gAGGa-CgaCGCGU---CGCU-CCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 27516 0.66 0.532913
Target:  5'- -gCCgccGCgGCgGCGGCGGGGa-CGCCCg -3'
miRNA:   3'- gaGGa--CGaCG-CGUCGCUCCggGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 28072 0.67 0.46798
Target:  5'- -aCCUGCccggucugGUGCuGUGGcGCCUGCCCg -3'
miRNA:   3'- gaGGACGa-------CGCGuCGCUcCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 28325 0.68 0.406529
Target:  5'- -cCCUGCgUGCcgcucgccggcggGCAGCGcGGCcgucauCCGCCCg -3'
miRNA:   3'- gaGGACG-ACG-------------CGUCGCuCCG------GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 28329 0.68 0.407359
Target:  5'- -gCCggGCccgGCGCcccGCGGGGCCgcgCGCCCg -3'
miRNA:   3'- gaGGa-CGa--CGCGu--CGCUCCGG---GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 28390 0.68 0.414877
Target:  5'- -gCCUGCUGUaugacauGCccuuuuuucaGGCGGGGCUuagCGCCCu -3'
miRNA:   3'- gaGGACGACG-------CG----------UCGCUCCGG---GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 28490 0.7 0.315686
Target:  5'- --gCUGCUGaCGCcuucuGGCGAGGCgUgGCCCg -3'
miRNA:   3'- gagGACGAC-GCG-----UCGCUCCG-GgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 28602 0.68 0.398287
Target:  5'- aUCCgcgagGCggccGCGCGcuacgcggcggccGCGGGGCCCGCggCCg -3'
miRNA:   3'- gAGGa----CGa---CGCGU-------------CGCUCCGGGCG--GG- -5'
6399 5' -63.7 NC_001847.1 + 28780 0.72 0.215855
Target:  5'- -gCCUGCUGCaGCGGCGcgugcagggcugccgGGGCCacaGCUCg -3'
miRNA:   3'- gaGGACGACG-CGUCGC---------------UCCGGg--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 29009 0.68 0.399106
Target:  5'- -gCCgGCgccgGCgGCAGCGGcGCCCGCgCCg -3'
miRNA:   3'- gaGGaCGa---CG-CGUCGCUcCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 29159 0.69 0.367187
Target:  5'- -gCCUGCcGCGaGGCGcuggaggcGGCCCGCCg -3'
miRNA:   3'- gaGGACGaCGCgUCGCu-------CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 29209 0.67 0.46798
Target:  5'- gCUCCcggUGCUcucgGcCGCGGCGGgccgcGGCCUGCCg -3'
miRNA:   3'- -GAGG---ACGA----C-GCGUCGCU-----CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 29296 0.69 0.367187
Target:  5'- gCUCCgggccgccgaGCUGCuCGGCGcGGCCCGCg- -3'
miRNA:   3'- -GAGGa---------CGACGcGUCGCuCCGGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.