miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 29365 0.69 0.367187
Target:  5'- -cCCggcggcGCUGCGCGcCGAGGCggCCGCCg -3'
miRNA:   3'- gaGGa-----CGACGCGUcGCUCCG--GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 29390 0.72 0.246118
Target:  5'- --gCUGCcGCGC-GCGAGGCCCuCCUa -3'
miRNA:   3'- gagGACGaCGCGuCGCUCCGGGcGGG- -5'
6399 5' -63.7 NC_001847.1 + 29424 0.74 0.172239
Target:  5'- -aCCUGC-GCGcCAGCGAgcgcuggggcguGGCgCCGCCCg -3'
miRNA:   3'- gaGGACGaCGC-GUCGCU------------CCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 29433 0.66 0.499053
Target:  5'- -cCCcGCUcgcgcgguacucgacGCGCGGCGcggcGGCCCGCgCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCGCu---CCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 29498 0.66 0.532913
Target:  5'- uCUCCgGCcGCggGCGGCGcuucggccgcAGaGCUCGCCCg -3'
miRNA:   3'- -GAGGaCGaCG--CGUCGC----------UC-CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 29986 0.75 0.138028
Target:  5'- -gCCggGCcgGCGCGGCGGGagccgccgcuGCCCGCCCg -3'
miRNA:   3'- gaGGa-CGa-CGCGUCGCUC----------CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 30350 0.69 0.337068
Target:  5'- -aCCcGCUGCcCGGgGAGGCgcuggcggcgCCGCCCg -3'
miRNA:   3'- gaGGaCGACGcGUCgCUCCG----------GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 31187 0.67 0.441411
Target:  5'- -gCCggaGCcGCGCGcCGAGGCgCCGCCg -3'
miRNA:   3'- gaGGa--CGaCGCGUcGCUCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 31207 0.7 0.318477
Target:  5'- gCUCUcGCUgagggcgcggcguggGCGCgcgaaAGCGGGGCgCGCCCg -3'
miRNA:   3'- -GAGGaCGA---------------CGCG-----UCGCUCCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 31298 0.67 0.46798
Target:  5'- gCUCgUGCUGCuGCGGCGcgccgcGGGCggCgGCCUg -3'
miRNA:   3'- -GAGgACGACG-CGUCGC------UCCG--GgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 31586 0.67 0.477018
Target:  5'- -aCCUaGCucUGCGCGcGUGuGGCCaGCCCg -3'
miRNA:   3'- gaGGA-CG--ACGCGU-CGCuCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 31897 0.66 0.542468
Target:  5'- --gCUGCUGcCGCcgccGcCGccGCCCGCCCg -3'
miRNA:   3'- gagGACGAC-GCGu---C-GCucCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 31956 0.7 0.322698
Target:  5'- gUCCgGC-GCGCGGCGcgcggggcGGGCCCcggggcgcgaaGCCCg -3'
miRNA:   3'- gAGGaCGaCGCGUCGC--------UCCGGG-----------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 31957 0.71 0.269828
Target:  5'- -gCCUGCcGCgGCGGCGgcGGGCCCcguggacgccGCCCu -3'
miRNA:   3'- gaGGACGaCG-CGUCGC--UCCGGG----------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 32027 0.69 0.359487
Target:  5'- gCUCCgGCgggGCGCGGgGAcgGcGCCCGCgCg -3'
miRNA:   3'- -GAGGaCGa--CGCGUCgCU--C-CGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 32330 0.72 0.213821
Target:  5'- -gCCcGCgcgGCGCGGCGcggaggGGGCCCaGCCCc -3'
miRNA:   3'- gaGGaCGa--CGCGUCGC------UCCGGG-CGGG- -5'
6399 5' -63.7 NC_001847.1 + 32690 0.67 0.450173
Target:  5'- gCUCgaGCUGUGCGGCGccgucucGGCgCGCUUc -3'
miRNA:   3'- -GAGgaCGACGCGUCGCu------CCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 32810 0.68 0.390961
Target:  5'- gCUCUUugagcgcgcGCgaGCGC-GCGAGGCCCGCg- -3'
miRNA:   3'- -GAGGA---------CGa-CGCGuCGCUCCGGGCGgg -5'
6399 5' -63.7 NC_001847.1 + 33493 0.66 0.495348
Target:  5'- gUCCgcgGCggcgGCGCgGGCGgcggcGGGCgCCGCCg -3'
miRNA:   3'- gAGGa--CGa---CGCG-UCGC-----UCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 33910 0.67 0.441411
Target:  5'- -gCCagGCUGCuCGGgGAGGCUgGCCUc -3'
miRNA:   3'- gaGGa-CGACGcGUCgCUCCGGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.