miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 134840 0.69 0.359487
Target:  5'- gCUCCgGCgggGCGCGGgGAcgGcGCCCGCgCg -3'
miRNA:   3'- -GAGGaCGa--CGCGUCgCU--C-CGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 134769 0.7 0.322698
Target:  5'- gUCCgGC-GCGCGGCGcgcggggcGGGCCCcggggcgcgaaGCCCg -3'
miRNA:   3'- gAGGaCGaCGCGUCGC--------UCCGGG-----------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 134111 0.67 0.46798
Target:  5'- gCUCgUGCUGCuGCGGCGcgccgcGGGCggCgGCCUg -3'
miRNA:   3'- -GAGgACGACG-CGUCGC------UCCG--GgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 134000 0.67 0.441411
Target:  5'- -gCCggaGCcGCGCGcCGAGGCgCCGCCg -3'
miRNA:   3'- gaGGa--CGaCGCGUcGCUCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 133164 0.67 0.486142
Target:  5'- uUUCUGCgcugcuaccUGCGCgGGCGcGGgCUGCCCu -3'
miRNA:   3'- gAGGACG---------ACGCG-UCGCuCCgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 133163 0.69 0.337068
Target:  5'- -aCCcGCUGCcCGGgGAGGCgcuggcggcgCCGCCCg -3'
miRNA:   3'- gaGGaCGACGcGUCgCUCCG----------GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 132799 0.75 0.138028
Target:  5'- -gCCggGCcgGCGCGGCGGGagccgccgcuGCCCGCCCg -3'
miRNA:   3'- gaGGa-CGa-CGCGUCGCUC----------CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 132541 0.68 0.42418
Target:  5'- cCUCCg---GCGCGGCG-GGCUCGCg- -3'
miRNA:   3'- -GAGGacgaCGCGUCGCuCCGGGCGgg -5'
6399 5' -63.7 NC_001847.1 + 132246 0.66 0.499053
Target:  5'- -cCCcGCUcgcgcgguacucgacGCGCGGCGcggcGGCCCGCgCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCGCu---CCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 132178 0.69 0.367187
Target:  5'- -cCCggcggcGCUGCGCGcCGAGGCggCCGCCg -3'
miRNA:   3'- gaGGa-----CGACGCGUcGCUCCG--GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 132149 0.68 0.42418
Target:  5'- gCUgCUGCcGCGCagGGUGGGGCCgGCg- -3'
miRNA:   3'- -GAgGACGaCGCG--UCGCUCCGGgCGgg -5'
6399 5' -63.7 NC_001847.1 + 132109 0.69 0.367187
Target:  5'- gCUCCgggccgccgaGCUGCuCGGCGcGGCCCGCg- -3'
miRNA:   3'- -GAGGa---------CGACGcGUCGCuCCGGGCGgg -5'
6399 5' -63.7 NC_001847.1 + 132022 0.67 0.46798
Target:  5'- gCUCCcggUGCUcucgGcCGCGGCGGgccgcGGCCUGCCg -3'
miRNA:   3'- -GAGG---ACGA----C-GCGUCGCU-----CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 131972 0.69 0.367187
Target:  5'- -gCCUGCcGCGaGGCGcuggaggcGGCCCGCCg -3'
miRNA:   3'- gaGGACGaCGCgUCGCu-------CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 131822 0.68 0.399106
Target:  5'- -gCCgGCgccgGCgGCAGCGGcGCCCGCgCCg -3'
miRNA:   3'- gaGGaCGa---CG-CGUCGCUcCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 131593 0.72 0.215855
Target:  5'- -gCCUGCUGCaGCGGCGcgugcagggcugccgGGGCCacaGCUCg -3'
miRNA:   3'- gaGGACGACG-CGUCGC---------------UCCGGg--CGGG- -5'
6399 5' -63.7 NC_001847.1 + 131458 0.66 0.494424
Target:  5'- -aCCUGUggUGCGCGcaggcucGCGGcGGCCUGCUg -3'
miRNA:   3'- gaGGACG--ACGCGU-------CGCU-CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 131415 0.68 0.398287
Target:  5'- aUCCgcgagGCggccGCGCGcuacgcggcggccGCGGGGCCCGCggCCg -3'
miRNA:   3'- gAGGa----CGa---CGCGU-------------CGCUCCGGGCG--GG- -5'
6399 5' -63.7 NC_001847.1 + 131303 0.7 0.315686
Target:  5'- --gCUGCUGaCGCcuucuGGCGAGGCgUgGCCCg -3'
miRNA:   3'- gagGACGAC-GCG-----UCGCUCCG-GgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 131270 0.72 0.240467
Target:  5'- gCUCCgcugggaGCUGCGCAGCcccGGCgCCGUCUa -3'
miRNA:   3'- -GAGGa------CGACGCGUCGcu-CCG-GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.