miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 115810 0.68 0.42418
Target:  5'- gCUCCgcgcGCUGCGCuGCGgcGGGCuCUGCg- -3'
miRNA:   3'- -GAGGa---CGACGCGuCGC--UCCG-GGCGgg -5'
6399 5' -63.7 NC_001847.1 + 115744 0.67 0.489815
Target:  5'- -gCCUGCUGCGUcgccGCGGagccgacggggagccGGCUCGgCCa -3'
miRNA:   3'- gaGGACGACGCGu---CGCU---------------CCGGGCgGG- -5'
6399 5' -63.7 NC_001847.1 + 115685 0.66 0.532913
Target:  5'- ----aGC-GCGCGGCGGagcGGCUgGCCCg -3'
miRNA:   3'- gaggaCGaCGCGUCGCU---CCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 115671 0.68 0.412362
Target:  5'- gUCCgugcgggugagcgGCUGCGCgggGGCGAGaGCCgGCUg -3'
miRNA:   3'- gAGGa------------CGACGCG---UCGCUC-CGGgCGGg -5'
6399 5' -63.7 NC_001847.1 + 114936 0.71 0.25775
Target:  5'- -gCUcGCguuugGCGgGGCGGGGCgCCGCCCc -3'
miRNA:   3'- gaGGaCGa----CGCgUCGCUCCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 114384 0.79 0.080935
Target:  5'- -aUCUGC-GCGCcgacgaaGGCGAGGCCCGCCUc -3'
miRNA:   3'- gaGGACGaCGCG-------UCGCUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 114120 0.67 0.459031
Target:  5'- uCUCuCU-CUGCGCAGgGucGCCCGCa- -3'
miRNA:   3'- -GAG-GAcGACGCGUCgCucCGGGCGgg -5'
6399 5' -63.7 NC_001847.1 + 113613 0.66 0.498125
Target:  5'- -gCCaGCUugggcgcguuggcccGCGCGGCccccgccGAGGCgCGCCCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCG-------CUCCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 113502 0.73 0.203892
Target:  5'- cCUCCgGUcGCGCccgGGCGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGaCGaCGCG---UCGCuCCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 112960 0.67 0.441411
Target:  5'- --gCUGCUGCaGCucucgcccgAGC-AGGCCgGCCCg -3'
miRNA:   3'- gagGACGACG-CG---------UCGcUCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 111288 0.67 0.477018
Target:  5'- -gCCggggGCgGCGCucggccgggGGCGGGGCCCcuuacguggGCCCc -3'
miRNA:   3'- gaGGa---CGaCGCG---------UCGCUCCGGG---------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 111161 0.68 0.406529
Target:  5'- gUCCUcgucgcaggugacGgaGgGCAGCGAGGgcuuCUCGCCCg -3'
miRNA:   3'- gAGGA-------------CgaCgCGUCGCUCC----GGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 110877 0.68 0.399106
Target:  5'- uUUUUGCgccaGCGGgGGGGCCUGUCCa -3'
miRNA:   3'- gAGGACGacg-CGUCgCUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 110811 0.67 0.432746
Target:  5'- -gCC-GC-GCGCGGCGuGGCgCGCCa -3'
miRNA:   3'- gaGGaCGaCGCGUCGCuCCGgGCGGg -5'
6399 5' -63.7 NC_001847.1 + 110623 0.66 0.523419
Target:  5'- aUCgUGCaGCGC-GCGAGcCCCgacGCCCa -3'
miRNA:   3'- gAGgACGaCGCGuCGCUCcGGG---CGGG- -5'
6399 5' -63.7 NC_001847.1 + 110182 0.66 0.51399
Target:  5'- gCUCUguUGCUGCGCcaccuGCcGGGCaagCCGCCg -3'
miRNA:   3'- -GAGG--ACGACGCGu----CGcUCCG---GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 109945 0.69 0.351899
Target:  5'- -gCCgGCcGCGC-GCGGGGCUCGCUg -3'
miRNA:   3'- gaGGaCGaCGCGuCGCUCCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 109153 0.67 0.486142
Target:  5'- -gCCUGC-GCGCccGCcc-GCCCGCCCu -3'
miRNA:   3'- gaGGACGaCGCGu-CGcucCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 109073 0.66 0.546306
Target:  5'- aUCuCUGCUGCcggGCccagguugccugccgAGCGAgcaccuGGCCCGCaCCu -3'
miRNA:   3'- gAG-GACGACG---CG---------------UCGCU------CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 108757 0.68 0.416559
Target:  5'- uUCCUGCcGCGCugGGCGccggacgcgccgggcGGCCCaCCCg -3'
miRNA:   3'- gAGGACGaCGCG--UCGCu--------------CCGGGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.