miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 77718 0.81 0.053633
Target:  5'- --gCUGgUGCGCGcuuggcgcgcguGCGAGGCCCGCCCg -3'
miRNA:   3'- gagGACgACGCGU------------CGCUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 113502 0.73 0.203892
Target:  5'- cCUCCgGUcGCGCccgGGCGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGaCGaCGCG---UCGCuCCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 12327 0.72 0.213821
Target:  5'- -aCCUGC-GCGCcauCGAGGuCCUGCCCg -3'
miRNA:   3'- gaGGACGaCGCGuc-GCUCC-GGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 53878 0.66 0.542468
Target:  5'- -aCCgccGCggGgGCGGCG-GGCCC-CCCg -3'
miRNA:   3'- gaGGa--CGa-CgCGUCGCuCCGGGcGGG- -5'
6399 5' -63.7 NC_001847.1 + 48504 0.77 0.107408
Target:  5'- gCUCCg---GgGCGGCGcGGCCCGCCCa -3'
miRNA:   3'- -GAGGacgaCgCGUCGCuCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 15088 0.76 0.128084
Target:  5'- -gCCUGCg--GCAGCGGGGCCgCGCUCa -3'
miRNA:   3'- gaGGACGacgCGUCGCUCCGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 132799 0.75 0.138028
Target:  5'- -gCCggGCcgGCGCGGCGGGagccgccgcuGCCCGCCCg -3'
miRNA:   3'- gaGGa-CGa-CGCGUCGCUC----------CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 65863 0.75 0.141497
Target:  5'- -gCCUuCUGCGCGGCGAgcugacguggGGgCCGCCCa -3'
miRNA:   3'- gaGGAcGACGCGUCGCU----------CCgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 74252 0.74 0.160067
Target:  5'- -gCCUGCUGCcgccGCuGCuGGGGCCCGCgCg -3'
miRNA:   3'- gaGGACGACG----CGuCG-CUCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 55511 0.73 0.189749
Target:  5'- -cCCUGCUGC-UGGCGGcGCCCGCCg -3'
miRNA:   3'- gaGGACGACGcGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 29424 0.74 0.172239
Target:  5'- -aCCUGC-GCGcCAGCGAgcgcuggggcguGGCgCCGCCCg -3'
miRNA:   3'- gaGGACGaCGC-GUCGCU------------CCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 54044 0.75 0.156185
Target:  5'- gUCCUcgucgGC-GCGCGGCGAGGCcgCCGCCa -3'
miRNA:   3'- gAGGA-----CGaCGCGUCGCUCCG--GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 73886 0.8 0.069525
Target:  5'- uUCCgccgGCgccccGCGCAGCGAuGGCCCaGCCCg -3'
miRNA:   3'- gAGGa---CGa----CGCGUCGCU-CCGGG-CGGG- -5'
6399 5' -63.7 NC_001847.1 + 103683 0.74 0.172239
Target:  5'- cCUCCac--GCGCGGCGGcGGCCCGCgCCg -3'
miRNA:   3'- -GAGGacgaCGCGUCGCU-CCGGGCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 87403 0.78 0.083252
Target:  5'- -aCUUGC-GCGCgGGCGGGGcCCCGCCCg -3'
miRNA:   3'- gaGGACGaCGCG-UCGCUCC-GGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 120737 0.75 0.152389
Target:  5'- -aCCcGCUGCG-AGCGGGGCCuCGCgCCa -3'
miRNA:   3'- gaGGaCGACGCgUCGCUCCGG-GCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 45260 0.73 0.18523
Target:  5'- -gCCgGCgugaGCGCGGCGAaGCCCGCCg -3'
miRNA:   3'- gaGGaCGa---CGCGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 52037 0.72 0.213821
Target:  5'- ---gUGCUaCGCgaGGCgGAGGCCCGCCCg -3'
miRNA:   3'- gaggACGAcGCG--UCG-CUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 103162 0.78 0.094603
Target:  5'- cCUCCcggGCUucGCGCccCGGGGCCCGCCCc -3'
miRNA:   3'- -GAGGa--CGA--CGCGucGCUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 55442 0.75 0.138028
Target:  5'- gUCCUGCaGCGCcuggcgccGGCGGGGCgCGCgCCg -3'
miRNA:   3'- gAGGACGaCGCG--------UCGCUCCGgGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.