Results 41 - 60 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6399 | 5' | -63.7 | NC_001847.1 | + | 56858 | 0.71 | 0.26013 |
Target: 5'- -gUCUGCgcccggcggcccggGCGCGGCcacGGGCCCGCCg -3' miRNA: 3'- gaGGACGa-------------CGCGUCGc--UCCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 113502 | 0.73 | 0.203892 |
Target: 5'- cCUCCgGUcGCGCccgGGCGcGGCCCGCgCCg -3' miRNA: 3'- -GAGGaCGaCGCG---UCGCuCCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 87403 | 0.78 | 0.083252 |
Target: 5'- -aCUUGC-GCGCgGGCGGGGcCCCGCCCg -3' miRNA: 3'- gaGGACGaCGCG-UCGCUCC-GGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 89910 | 0.71 | 0.25775 |
Target: 5'- -cCCgagGUUGUGCcgcGCGAGGCCgCGCUCg -3' miRNA: 3'- gaGGa--CGACGCGu--CGCUCCGG-GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 73886 | 0.8 | 0.069525 |
Target: 5'- uUCCgccgGCgccccGCGCAGCGAuGGCCCaGCCCg -3' miRNA: 3'- gAGGa---CGa----CGCGUCGCU-CCGGG-CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 124976 | 0.7 | 0.329825 |
Target: 5'- ----aGCcgGCGCAGCG-GGCCgGCCUg -3' miRNA: 3'- gaggaCGa-CGCGUCGCuCCGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 48504 | 0.77 | 0.107408 |
Target: 5'- gCUCCg---GgGCGGCGcGGCCCGCCCa -3' miRNA: 3'- -GAGGacgaCgCGUCGCuCCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 36969 | 0.7 | 0.329825 |
Target: 5'- -gCCaGCgcggGCGcCGGCGAgcgGGCCCGCgCCg -3' miRNA: 3'- gaGGaCGa---CGC-GUCGCU---CCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 31207 | 0.7 | 0.318477 |
Target: 5'- gCUCUcGCUgagggcgcggcguggGCGCgcgaaAGCGGGGCgCGCCCg -3' miRNA: 3'- -GAGGaCGA---------------CGCG-----UCGCUCCGgGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 104716 | 0.7 | 0.302009 |
Target: 5'- -gCC-GCgaGCGCGuGCGAGaGCCCGCCg -3' miRNA: 3'- gaGGaCGa-CGCGU-CGCUC-CGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 42025 | 0.7 | 0.288793 |
Target: 5'- -gCCgUGCcgGCGCGGCGccuuuauaGCCCGCCCc -3' miRNA: 3'- gaGG-ACGa-CGCGUCGCuc------CGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 961 | 0.71 | 0.263733 |
Target: 5'- gCUCCacGCUGCGCcgGGCGucuauGcGCCgGCCCg -3' miRNA: 3'- -GAGGa-CGACGCG--UCGCu----C-CGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 73052 | 0.71 | 0.263733 |
Target: 5'- -aCCUGUacaugacGCGCGGCGA--CCCGCCCa -3' miRNA: 3'- gaGGACGa------CGCGUCGCUccGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 108733 | 0.71 | 0.251879 |
Target: 5'- -gCCgcuagGCggaUGgGCGGCGgacgacGGGCCCGCCCg -3' miRNA: 3'- gaGGa----CG---ACgCGUCGC------UCCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 29390 | 0.72 | 0.246118 |
Target: 5'- --gCUGCcGCGC-GCGAGGCCCuCCUa -3' miRNA: 3'- gagGACGaCGCGuCGCUCCGGGcGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 103414 | 0.72 | 0.224162 |
Target: 5'- cCUCCgcggccGCUcCGCAGCGGcgcgcGGCCCGCgCCu -3' miRNA: 3'- -GAGGa-----CGAcGCGUCGCU-----CCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 12327 | 0.72 | 0.213821 |
Target: 5'- -aCCUGC-GCGCcauCGAGGuCCUGCCCg -3' miRNA: 3'- gaGGACGaCGCGuc-GCUCC-GGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 103683 | 0.74 | 0.172239 |
Target: 5'- cCUCCac--GCGCGGCGGcGGCCCGCgCCg -3' miRNA: 3'- -GAGGacgaCGCGUCGCU-CCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 74252 | 0.74 | 0.160067 |
Target: 5'- -gCCUGCUGCcgccGCuGCuGGGGCCCGCgCg -3' miRNA: 3'- gaGGACGACG----CGuCG-CUCCGGGCGgG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 132799 | 0.75 | 0.138028 |
Target: 5'- -gCCggGCcgGCGCGGCGGGagccgccgcuGCCCGCCCg -3' miRNA: 3'- gaGGa-CGa-CGCGUCGCUC----------CGGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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