Results 61 - 80 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6399 | 5' | -63.7 | NC_001847.1 | + | 73052 | 0.71 | 0.263733 |
Target: 5'- -aCCUGUacaugacGCGCGGCGA--CCCGCCCa -3' miRNA: 3'- gaGGACGa------CGCGUCGCUccGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 31957 | 0.71 | 0.269828 |
Target: 5'- -gCCUGCcGCgGCGGCGgcGGGCCCcguggacgccGCCCu -3' miRNA: 3'- gaGGACGaCG-CGUCGC--UCCGGG----------CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 15088 | 0.76 | 0.128084 |
Target: 5'- -gCCUGCg--GCAGCGGGGCCgCGCUCa -3' miRNA: 3'- gaGGACGacgCGUCGCUCCGG-GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 65863 | 0.75 | 0.141497 |
Target: 5'- -gCCUuCUGCGCGGCGAgcugacguggGGgCCGCCCa -3' miRNA: 3'- gaGGAcGACGCGUCGCU----------CCgGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 37588 | 0.74 | 0.168092 |
Target: 5'- gCUgCgGCUGCgGCGGCcgGGGGCCgGCCCg -3' miRNA: 3'- -GAgGaCGACG-CGUCG--CUCCGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 45260 | 0.73 | 0.18523 |
Target: 5'- -gCCgGCgugaGCGCGGCGAaGCCCGCCg -3' miRNA: 3'- gaGGaCGa---CGCGUCGCUcCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 131593 | 0.72 | 0.215855 |
Target: 5'- -gCCUGCUGCaGCGGCGcgugcagggcugccgGGGCCacaGCUCg -3' miRNA: 3'- gaGGACGACG-CGUCGC---------------UCCGGg--CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 99736 | 0.72 | 0.22949 |
Target: 5'- -gCC-GCUGCGCGgguGCGuuGGCCgGCCCg -3' miRNA: 3'- gaGGaCGACGCGU---CGCu-CCGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 123796 | 0.71 | 0.251879 |
Target: 5'- -gCCUGCgcggcgGCgGCAGCGgcAGGCgCCGUCCu -3' miRNA: 3'- gaGGACGa-----CG-CGUCGC--UCCG-GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 61931 | 0.71 | 0.25775 |
Target: 5'- cCUCCUccGCgucaGCgGCGGCGcGGCCCGCgCg -3' miRNA: 3'- -GAGGA--CGa---CG-CGUCGCuCCGGGCGgG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 102880 | 0.68 | 0.390961 |
Target: 5'- uUUCg---GCGCGGCGggcccGGGCCCGCUCu -3' miRNA: 3'- gAGGacgaCGCGUCGC-----UCCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 86034 | 0.68 | 0.382926 |
Target: 5'- --aCUGCUGCGCugguugGGCGAGGCgCUggggGCCa -3' miRNA: 3'- gagGACGACGCG------UCGCUCCG-GG----CGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 103555 | 0.7 | 0.302009 |
Target: 5'- uUCCcGC-GgGCcccccuagGGCGAGGCCgGCCCg -3' miRNA: 3'- gAGGaCGaCgCG--------UCGCUCCGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 101361 | 0.7 | 0.315686 |
Target: 5'- --gCUGCaUGCGCGcgcuugcgccGCGGGGgCUGCCCg -3' miRNA: 3'- gagGACG-ACGCGU----------CGCUCCgGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 36969 | 0.7 | 0.329825 |
Target: 5'- -gCCaGCgcggGCGcCGGCGAgcgGGCCCGCgCCg -3' miRNA: 3'- gaGGaCGa---CGC-GUCGCU---CCGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 124976 | 0.7 | 0.329825 |
Target: 5'- ----aGCcgGCGCAGCG-GGCCgGCCUg -3' miRNA: 3'- gaggaCGa-CGCGUCGCuCCGGgCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 13953 | 0.69 | 0.344427 |
Target: 5'- gCUgCgGCUGCgGCccGUGGGaGCCCGCCCc -3' miRNA: 3'- -GAgGaCGACG-CGu-CGCUC-CGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 90191 | 0.69 | 0.359487 |
Target: 5'- gCUgCUGCgGCGCGcCGucGCCCaGCCCg -3' miRNA: 3'- -GAgGACGaCGCGUcGCucCGGG-CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 132109 | 0.69 | 0.367187 |
Target: 5'- gCUCCgggccgccgaGCUGCuCGGCGcGGCCCGCg- -3' miRNA: 3'- -GAGGa---------CGACGcGUCGCuCCGGGCGgg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 21169 | 0.69 | 0.375001 |
Target: 5'- gCUCCUGgaGCGCuucuGCGGcGaCgCGCCCg -3' miRNA: 3'- -GAGGACgaCGCGu---CGCUcC-GgGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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