miRNA display CGI


Results 81 - 100 of 388 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 53090 0.7 0.30879
Target:  5'- gCUCa-GCguucgGCGgGGCGGcGGCCCGCCa -3'
miRNA:   3'- -GAGgaCGa----CGCgUCGCU-CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 94050 0.7 0.322698
Target:  5'- -aCgUGCagGCGCAGCuGGGCCgGCaCCa -3'
miRNA:   3'- gaGgACGa-CGCGUCGcUCCGGgCG-GG- -5'
6399 5' -63.7 NC_001847.1 + 11467 0.7 0.329825
Target:  5'- -aCCgUGC-GCGUGGCGAGcCCCGCCa -3'
miRNA:   3'- gaGG-ACGaCGCGUCGCUCcGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 124428 0.69 0.337068
Target:  5'- aCUCgCUgGCgGCGCuuggccGGCGcGGGCCgCGCCCg -3'
miRNA:   3'- -GAG-GA-CGaCGCG------UCGC-UCCGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 96683 0.69 0.345169
Target:  5'- aUCCUGCaggagucggagauucGCGaCuGCGAuGCCCGCCCc -3'
miRNA:   3'- gAGGACGa--------------CGC-GuCGCUcCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 132109 0.69 0.367187
Target:  5'- gCUCCgggccgccgaGCUGCuCGGCGcGGCCCGCg- -3'
miRNA:   3'- -GAGGa---------CGACGcGUCGCuCCGGGCGgg -5'
6399 5' -63.7 NC_001847.1 + 21169 0.69 0.375001
Target:  5'- gCUCCUGgaGCGCuucuGCGGcGaCgCGCCCg -3'
miRNA:   3'- -GAGGACgaCGCGu---CGCUcC-GgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 61931 0.71 0.25775
Target:  5'- cCUCCUccGCgucaGCgGCGGCGcGGCCCGCgCg -3'
miRNA:   3'- -GAGGA--CGa---CG-CGUCGCuCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 123796 0.71 0.251879
Target:  5'- -gCCUGCgcggcgGCgGCAGCGgcAGGCgCCGUCCu -3'
miRNA:   3'- gaGGACGa-----CG-CGUCGC--UCCG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 99736 0.72 0.22949
Target:  5'- -gCC-GCUGCGCGgguGCGuuGGCCgGCCCg -3'
miRNA:   3'- gaGGaCGACGCGU---CGCu-CCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 131415 0.68 0.398287
Target:  5'- aUCCgcgagGCggccGCGCGcuacgcggcggccGCGGGGCCCGCggCCg -3'
miRNA:   3'- gAGGa----CGa---CGCGU-------------CGCUCCGGGCG--GG- -5'
6399 5' -63.7 NC_001847.1 + 9618 0.68 0.399106
Target:  5'- -aCCguaGCUGCGCccgccgccGCGccGGCCCGCCg -3'
miRNA:   3'- gaGGa--CGACGCGu-------CGCu-CCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 28325 0.68 0.406529
Target:  5'- -cCCUGCgUGCcgcucgccggcggGCAGCGcGGCcgucauCCGCCCg -3'
miRNA:   3'- gaGGACG-ACG-------------CGUCGCuCCG------GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 85554 0.68 0.407359
Target:  5'- gCUCCcGCUGCGCcc--AGGCgCCGCCg -3'
miRNA:   3'- -GAGGaCGACGCGucgcUCCG-GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 28390 0.68 0.414877
Target:  5'- -gCCUGCUGUaugacauGCccuuuuuucaGGCGGGGCUuagCGCCCu -3'
miRNA:   3'- gaGGACGACG-------CG----------UCGCUCCGG---GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 15088 0.76 0.128084
Target:  5'- -gCCUGCg--GCAGCGGGGCCgCGCUCa -3'
miRNA:   3'- gaGGACGacgCGUCGCUCCGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 65863 0.75 0.141497
Target:  5'- -gCCUuCUGCGCGGCGAgcugacguggGGgCCGCCCa -3'
miRNA:   3'- gaGGAcGACGCGUCGCU----------CCgGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 37588 0.74 0.168092
Target:  5'- gCUgCgGCUGCgGCGGCcgGGGGCCgGCCCg -3'
miRNA:   3'- -GAgGaCGACG-CGUCG--CUCCGGgCGGG- -5'
6399 5' -63.7 NC_001847.1 + 45260 0.73 0.18523
Target:  5'- -gCCgGCgugaGCGCGGCGAaGCCCGCCg -3'
miRNA:   3'- gaGGaCGa---CGCGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 131593 0.72 0.215855
Target:  5'- -gCCUGCUGCaGCGGCGcgugcagggcugccgGGGCCacaGCUCg -3'
miRNA:   3'- gaGGACGACG-CGUCGC---------------UCCGGg--CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.