Results 61 - 80 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6399 | 5' | -63.7 | NC_001847.1 | + | 104384 | 0.66 | 0.523419 |
Target: 5'- ----cGCggcGCuGCAGCGGGccgcggucuacGCCCGCCCa -3' miRNA: 3'- gaggaCGa--CG-CGUCGCUC-----------CGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 85049 | 0.66 | 0.523419 |
Target: 5'- -gCC-GCccgGCGCGGCagccuuGGCCgCGCCCg -3' miRNA: 3'- gaGGaCGa--CGCGUCGcu----CCGG-GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 7369 | 0.66 | 0.51399 |
Target: 5'- gCUCUguUGCUGCGCcaccuGCcGGGCaagCCGCCg -3' miRNA: 3'- -GAGG--ACGACGCGu----CGcUCCG---GGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 101625 | 0.66 | 0.504632 |
Target: 5'- -cCCgGCgccucCGCGGCGGcGCCCGCCg -3' miRNA: 3'- gaGGaCGac---GCGUCGCUcCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 65457 | 0.66 | 0.504632 |
Target: 5'- -cCCguguagGCggGCGCGcGCgGAGGCUCGCUCu -3' miRNA: 3'- gaGGa-----CGa-CGCGU-CG-CUCCGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 2082 | 0.66 | 0.504632 |
Target: 5'- ----gGCgaGCGCcccGCGGGGCCCGCgCg -3' miRNA: 3'- gaggaCGa-CGCGu--CGCUCCGGGCGgG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 29433 | 0.66 | 0.499053 |
Target: 5'- -cCCcGCUcgcgcgguacucgacGCGCGGCGcggcGGCCCGCgCg -3' miRNA: 3'- gaGGaCGA---------------CGCGUCGCu---CCGGGCGgG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 113613 | 0.66 | 0.498125 |
Target: 5'- -gCCaGCUugggcgcguuggcccGCGCGGCccccgccGAGGCgCGCCCg -3' miRNA: 3'- gaGGaCGA---------------CGCGUCG-------CUCCGgGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 125502 | 0.66 | 0.495348 |
Target: 5'- -cCCgGCUGCucgaGCGGCG-GGCCgGCgCg -3' miRNA: 3'- gaGGaCGACG----CGUCGCuCCGGgCGgG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 97305 | 0.66 | 0.495348 |
Target: 5'- gUCCgaugacacgGCggcagGCGCgucGGCGucGcGCCCGCCCg -3' miRNA: 3'- gAGGa--------CGa----CGCG---UCGCu-C-CGGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 3208 | 0.66 | 0.51399 |
Target: 5'- gUCCgccaGCUcGCGCAGCcgcucGcGCgCCGCCCg -3' miRNA: 3'- gAGGa---CGA-CGCGUCGcu---C-CG-GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 66992 | 0.66 | 0.51399 |
Target: 5'- --gCUGCgGCGCGGCGccggagaagGGGCagacgcgcgcUCGCCCg -3' miRNA: 3'- gagGACGaCGCGUCGC---------UCCG----------GGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 115974 | 0.66 | 0.523419 |
Target: 5'- -gCCgUGCUGCGCgggguaacaacgGGCGcGGCCgcUGCCUa -3' miRNA: 3'- gaGG-ACGACGCG------------UCGCuCCGG--GCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 37093 | 0.66 | 0.523419 |
Target: 5'- -gCCUGa-GCGCGGagaGcGGCCCGCUg -3' miRNA: 3'- gaGGACgaCGCGUCg--CuCCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 104767 | 0.66 | 0.523419 |
Target: 5'- -gUCUGCgcccGCacCAGCGccgaGGGCCCGCCa -3' miRNA: 3'- gaGGACGa---CGc-GUCGC----UCCGGGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 123165 | 0.66 | 0.51399 |
Target: 5'- uUCCgGagacgGCGCGGCGgcgcucAGG-CCGCCCa -3' miRNA: 3'- gAGGaCga---CGCGUCGC------UCCgGGCGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 88385 | 0.66 | 0.51399 |
Target: 5'- -aCCgGCcccGCGCGGCGggcGGGCgCGCCg -3' miRNA: 3'- gaGGaCGa--CGCGUCGC---UCCGgGCGGg -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 101452 | 0.66 | 0.51399 |
Target: 5'- -gCC-GCcGCGCcGCGAGcGCCUGCgCCu -3' miRNA: 3'- gaGGaCGaCGCGuCGCUC-CGGGCG-GG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 101104 | 0.66 | 0.51399 |
Target: 5'- ----cGC-GCGCcGCGGGGCCCaucgccugGCCCa -3' miRNA: 3'- gaggaCGaCGCGuCGCUCCGGG--------CGGG- -5' |
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6399 | 5' | -63.7 | NC_001847.1 | + | 74168 | 0.66 | 0.51399 |
Target: 5'- -gCCguggGCgcGCGCAGCGGGGa-CGCCa -3' miRNA: 3'- gaGGa---CGa-CGCGUCGCUCCggGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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