miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6399 5' -63.7 NC_001847.1 + 116309 0.67 0.486142
Target:  5'- -cCCgUGCgGCGCGcGCGAGgacGCCgUGCCCa -3'
miRNA:   3'- gaGG-ACGaCGCGU-CGCUC---CGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 61446 0.67 0.486142
Target:  5'- -gCC-GCcggGCGCGGCGAGGCggUCGCgCa -3'
miRNA:   3'- gaGGaCGa--CGCGUCGCUCCG--GGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 44289 0.67 0.486142
Target:  5'- -aCCggcgGCgcgGCGCGGCGcggcGGGCCagCGCCa -3'
miRNA:   3'- gaGGa---CGa--CGCGUCGC----UCCGG--GCGGg -5'
6399 5' -63.7 NC_001847.1 + 39840 0.67 0.486142
Target:  5'- uUCCUGCgugGCGC-GCGccagccgccgguAGGCUuCGUCCa -3'
miRNA:   3'- gAGGACGa--CGCGuCGC------------UCCGG-GCGGG- -5'
6399 5' -63.7 NC_001847.1 + 6340 0.67 0.486142
Target:  5'- -gCCUGC-GCGCccGCcc-GCCCGCCCu -3'
miRNA:   3'- gaGGACGaCGCGu-CGcucCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 127819 0.67 0.486142
Target:  5'- uUCUUGCagGCGaaaUAGCGucGGUCCGCUCa -3'
miRNA:   3'- gAGGACGa-CGC---GUCGCu-CCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 103003 0.67 0.486142
Target:  5'- -gCgUGCgcggGCGCGGCGGcGCCCaGCgCCg -3'
miRNA:   3'- gaGgACGa---CGCGUCGCUcCGGG-CG-GG- -5'
6399 5' -63.7 NC_001847.1 + 97305 0.66 0.495348
Target:  5'- gUCCgaugacacgGCggcagGCGCgucGGCGucGcGCCCGCCCg -3'
miRNA:   3'- gAGGa--------CGa----CGCG---UCGCu-C-CGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 125502 0.66 0.495348
Target:  5'- -cCCgGCUGCucgaGCGGCG-GGCCgGCgCg -3'
miRNA:   3'- gaGGaCGACG----CGUCGCuCCGGgCGgG- -5'
6399 5' -63.7 NC_001847.1 + 113613 0.66 0.498125
Target:  5'- -gCCaGCUugggcgcguuggcccGCGCGGCccccgccGAGGCgCGCCCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCG-------CUCCGgGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 101104 0.66 0.51399
Target:  5'- ----cGC-GCGCcGCGGGGCCCaucgccugGCCCa -3'
miRNA:   3'- gaggaCGaCGCGuCGCUCCGGG--------CGGG- -5'
6399 5' -63.7 NC_001847.1 + 74168 0.66 0.51399
Target:  5'- -gCCguggGCgcGCGCAGCGGGGa-CGCCa -3'
miRNA:   3'- gaGGa---CGa-CGCGUCGCUCCggGCGGg -5'
6399 5' -63.7 NC_001847.1 + 66992 0.66 0.51399
Target:  5'- --gCUGCgGCGCGGCGccggagaagGGGCagacgcgcgcUCGCCCg -3'
miRNA:   3'- gagGACGaCGCGUCGC---------UCCG----------GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 3208 0.66 0.51399
Target:  5'- gUCCgccaGCUcGCGCAGCcgcucGcGCgCCGCCCg -3'
miRNA:   3'- gAGGa---CGA-CGCGUCGcu---C-CG-GGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 7369 0.66 0.51399
Target:  5'- gCUCUguUGCUGCGCcaccuGCcGGGCaagCCGCCg -3'
miRNA:   3'- -GAGG--ACGACGCGu----CGcUCCG---GGCGGg -5'
6399 5' -63.7 NC_001847.1 + 101625 0.66 0.504632
Target:  5'- -cCCgGCgccucCGCGGCGGcGCCCGCCg -3'
miRNA:   3'- gaGGaCGac---GCGUCGCUcCGGGCGGg -5'
6399 5' -63.7 NC_001847.1 + 65457 0.66 0.504632
Target:  5'- -cCCguguagGCggGCGCGcGCgGAGGCUCGCUCu -3'
miRNA:   3'- gaGGa-----CGa-CGCGU-CG-CUCCGGGCGGG- -5'
6399 5' -63.7 NC_001847.1 + 2082 0.66 0.504632
Target:  5'- ----gGCgaGCGCcccGCGGGGCCCGCgCg -3'
miRNA:   3'- gaggaCGa-CGCGu--CGCUCCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 29433 0.66 0.499053
Target:  5'- -cCCcGCUcgcgcgguacucgacGCGCGGCGcggcGGCCCGCgCg -3'
miRNA:   3'- gaGGaCGA---------------CGCGUCGCu---CCGGGCGgG- -5'
6399 5' -63.7 NC_001847.1 + 87572 0.67 0.486142
Target:  5'- uUCCUcggcGCgUGCGCGGCcgccGGGCUccccgCGCCCg -3'
miRNA:   3'- gAGGA----CG-ACGCGUCGc---UCCGG-----GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.