miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
640 3' -66.5 AC_000017.1 + 9550 0.66 0.14559
Target:  5'- cGCCGCCcgucauguCCCGguuaUGGGUuggcgggGGGCUGC-Cg -3'
miRNA:   3'- aCGGCGG--------GGGCg---ACCCG-------UCCGACGuG- -5'
640 3' -66.5 AC_000017.1 + 5565 0.67 0.124027
Target:  5'- cGgCGCCUCCuCcaaGGGCAaGCUGCGCg -3'
miRNA:   3'- aCgGCGGGGGcGa--CCCGUcCGACGUG- -5'
640 3' -66.5 AC_000017.1 + 24006 0.67 0.124027
Target:  5'- cGCCGCaCCgcguCCGCgcucgGGGguGGUUucGCGCu -3'
miRNA:   3'- aCGGCG-GG----GGCGa----CCCguCCGA--CGUG- -5'
640 3' -66.5 AC_000017.1 + 8660 0.67 0.108112
Target:  5'- cGUCGgCgCCGCgcgcGGGCAGgagcugguGCUGCGCa -3'
miRNA:   3'- aCGGCgGgGGCGa---CCCGUC--------CGACGUG- -5'
640 3' -66.5 AC_000017.1 + 12824 0.67 0.105167
Target:  5'- -cCUGUCCCCGCggcacguuGGCGGGCUGUg- -3'
miRNA:   3'- acGGCGGGGGCGac------CCGUCCGACGug -5'
640 3' -66.5 AC_000017.1 + 22321 0.68 0.09678
Target:  5'- aGCUGUUCCugguugcggCGCaGGGUGGGCUGUACc -3'
miRNA:   3'- aCGGCGGGG---------GCGaCCCGUCCGACGUG- -5'
640 3' -66.5 AC_000017.1 + 12388 0.68 0.091544
Target:  5'- cGCCGCCCgcaCCGCcGGGUccGUUGCGu -3'
miRNA:   3'- aCGGCGGG---GGCGaCCCGucCGACGUg -5'
640 3' -66.5 AC_000017.1 + 26805 0.69 0.077405
Target:  5'- cUGCCGCUgCCGCcGGuGCaguagGGGCUGUAg -3'
miRNA:   3'- -ACGGCGGgGGCGaCC-CG-----UCCGACGUg -5'
640 3' -66.5 AC_000017.1 + 12144 0.69 0.072969
Target:  5'- cGCCGCUgCCCGUgccagccaGGGCccuuugcAGGCUGUGCa -3'
miRNA:   3'- aCGGCGG-GGGCGa-------CCCG-------UCCGACGUG- -5'
640 3' -66.5 AC_000017.1 + 16284 0.7 0.06537
Target:  5'- gGCCGCCgCCGCgcguUGGGC-GGCaGUGCc -3'
miRNA:   3'- aCGGCGGgGGCG----ACCCGuCCGaCGUG- -5'
640 3' -66.5 AC_000017.1 + 6702 0.71 0.052102
Target:  5'- uUGCCGCCCgCGCaUGGcaGCAGGCguuagacuUGCAa -3'
miRNA:   3'- -ACGGCGGGgGCG-ACC--CGUCCG--------ACGUg -5'
640 3' -66.5 AC_000017.1 + 15232 0.92 0.000893
Target:  5'- cUGCCGCCCCCGCUGcGG-AGGCUGCACa -3'
miRNA:   3'- -ACGGCGGGGGCGAC-CCgUCCGACGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.