miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6400 3' -49 NC_001847.1 + 110251 0.66 0.997282
Target:  5'- cGCGGcCUGCuCGCccgggacgaGUCGACGCgCUGCg -3'
miRNA:   3'- -UGUU-GACG-GCGaaa------UAGUUGCG-GAUG- -5'
6400 3' -49 NC_001847.1 + 21603 0.66 0.997282
Target:  5'- uCGAC-GCCGCUgagAUggaggcagaCGACGUCUGCg -3'
miRNA:   3'- uGUUGaCGGCGAaa-UA---------GUUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 133433 0.66 0.997282
Target:  5'- cGCGGCgGCgGCUgaucgUGcUCGACGCCg-- -3'
miRNA:   3'- -UGUUGaCGgCGAa----AU-AGUUGCGGaug -5'
6400 3' -49 NC_001847.1 + 22741 0.66 0.997282
Target:  5'- uAUGACUGCCGCg----CGGCGCg--- -3'
miRNA:   3'- -UGUUGACGGCGaaauaGUUGCGgaug -5'
6400 3' -49 NC_001847.1 + 56950 0.66 0.997282
Target:  5'- cGCAGCcGCCGCga----GAaGCCUACg -3'
miRNA:   3'- -UGUUGaCGGCGaaauagUUgCGGAUG- -5'
6400 3' -49 NC_001847.1 + 117303 0.66 0.997282
Target:  5'- gGCAACgcgaGCCGCg--AUgGGCGaCCUAg -3'
miRNA:   3'- -UGUUGa---CGGCGaaaUAgUUGC-GGAUg -5'
6400 3' -49 NC_001847.1 + 30620 0.66 0.997282
Target:  5'- cGCGGCgGCgGCUgaucgUGcUCGACGCCg-- -3'
miRNA:   3'- -UGUUGaCGgCGAa----AU-AGUUGCGGaug -5'
6400 3' -49 NC_001847.1 + 17319 0.66 0.997282
Target:  5'- cGCGGCacacgGCCGCguagcCGGCGCCUucuaGCg -3'
miRNA:   3'- -UGUUGa----CGGCGaaauaGUUGCGGA----UG- -5'
6400 3' -49 NC_001847.1 + 119597 0.66 0.997184
Target:  5'- cCGACgGCCGCgcgcgcacCGGCGCCaGCa -3'
miRNA:   3'- uGUUGaCGGCGaaaua---GUUGCGGaUG- -5'
6400 3' -49 NC_001847.1 + 42614 0.66 0.997135
Target:  5'- gACGGCgccGCCGCggaggggggcggCAGCGCCgACg -3'
miRNA:   3'- -UGUUGa--CGGCGaaaua-------GUUGCGGaUG- -5'
6400 3' -49 NC_001847.1 + 115408 0.66 0.996981
Target:  5'- gACAACgaccgucguccccaGCCgGCUUgccGUCAGCGCCcgGCu -3'
miRNA:   3'- -UGUUGa-------------CGG-CGAAa--UAGUUGCGGa-UG- -5'
6400 3' -49 NC_001847.1 + 129077 0.66 0.996766
Target:  5'- cACAAUUGCCGCgcc-UCccUGCUUGCu -3'
miRNA:   3'- -UGUUGACGGCGaaauAGuuGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 84901 0.66 0.996766
Target:  5'- cCAGCUucGCCGCgucGUCugccGCGcCCUGCa -3'
miRNA:   3'- uGUUGA--CGGCGaaaUAGu---UGC-GGAUG- -5'
6400 3' -49 NC_001847.1 + 26264 0.66 0.996766
Target:  5'- cACAAUUGCCGCgcc-UCccUGCUUGCu -3'
miRNA:   3'- -UGUUGACGGCGaaauAGuuGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 78648 0.66 0.996766
Target:  5'- gGCGGCgcgGUCGCg----C-GCGCCUGCg -3'
miRNA:   3'- -UGUUGa--CGGCGaaauaGuUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 116968 0.66 0.996766
Target:  5'- cCGGCUGCC-CUg---CGACGCCg-- -3'
miRNA:   3'- uGUUGACGGcGAaauaGUUGCGGaug -5'
6400 3' -49 NC_001847.1 + 131708 0.66 0.996766
Target:  5'- gGC-GCUGCCGCacg--UGGCGgCCUGCg -3'
miRNA:   3'- -UGuUGACGGCGaaauaGUUGC-GGAUG- -5'
6400 3' -49 NC_001847.1 + 48706 0.66 0.996766
Target:  5'- uGCAcGCUGcCCGCgccgcgCAGCGCCg-- -3'
miRNA:   3'- -UGU-UGAC-GGCGaaaua-GUUGCGGaug -5'
6400 3' -49 NC_001847.1 + 28895 0.66 0.996766
Target:  5'- gGC-GCUGCCGCacg--UGGCGgCCUGCg -3'
miRNA:   3'- -UGuUGACGGCGaaauaGUUGC-GGAUG- -5'
6400 3' -49 NC_001847.1 + 83137 0.66 0.996596
Target:  5'- gGCGGCcGCCGCggcGUCGggcgcguccgcgauGCGCCgGCg -3'
miRNA:   3'- -UGUUGaCGGCGaaaUAGU--------------UGCGGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.