miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6400 3' -49 NC_001847.1 + 89217 1.11 0.007541
Target:  5'- aACAACUGCCGCUUUAUCAACGCCUACa -3'
miRNA:   3'- -UGUUGACGGCGAAAUAGUUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 19218 0.83 0.381689
Target:  5'- gGCGAgUGCCGCUgcgacagcCAGCGCCUGCg -3'
miRNA:   3'- -UGUUgACGGCGAaaua----GUUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 116797 0.79 0.560883
Target:  5'- aACGGCUGCCGCcgacgGUaacGCGCCUGCa -3'
miRNA:   3'- -UGUUGACGGCGaaa--UAgu-UGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 13532 0.78 0.604426
Target:  5'- aGCGGCUGCCGCUagg-CAGCGCgacgCUGCa -3'
miRNA:   3'- -UGUUGACGGCGAaauaGUUGCG----GAUG- -5'
6400 3' -49 NC_001847.1 + 28013 0.76 0.734765
Target:  5'- cGCGGCgUGCCGCgcUUAcgAGCGCCUGCa -3'
miRNA:   3'- -UGUUG-ACGGCGa-AAUagUUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 44074 0.75 0.783832
Target:  5'- uGCAGCUGUCGUgccugcugCGGCGUCUGCg -3'
miRNA:   3'- -UGUUGACGGCGaaaua---GUUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 53723 0.75 0.785806
Target:  5'- gGCGGCUGgCGCUgu----GCGCCUGCg -3'
miRNA:   3'- -UGUUGACgGCGAaauaguUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 102698 0.74 0.805187
Target:  5'- gGCGugUGCUGCgg---CAGCGCCUGg -3'
miRNA:   3'- -UGUugACGGCGaaauaGUUGCGGAUg -5'
6400 3' -49 NC_001847.1 + 110742 0.74 0.813678
Target:  5'- cACGGCgGCCGCcacggccgccauuUUUGUCAACGCUUGa -3'
miRNA:   3'- -UGUUGaCGGCG-------------AAAUAGUUGCGGAUg -5'
6400 3' -49 NC_001847.1 + 101597 0.74 0.814612
Target:  5'- gGCGuCUGCCGCcucuUCGGCGCCcGCg -3'
miRNA:   3'- -UGUuGACGGCGaaauAGUUGCGGaUG- -5'
6400 3' -49 NC_001847.1 + 82133 0.74 0.841701
Target:  5'- cGCAGCgGCCGCcgcUGUCGGCuccgccauGCCUGCg -3'
miRNA:   3'- -UGUUGaCGGCGaa-AUAGUUG--------CGGAUG- -5'
6400 3' -49 NC_001847.1 + 120699 0.74 0.841701
Target:  5'- aGCAGCgcgGCCGCgcgcUCGGCGCCa-- -3'
miRNA:   3'- -UGUUGa--CGGCGaaauAGUUGCGGaug -5'
6400 3' -49 NC_001847.1 + 11433 0.74 0.841701
Target:  5'- cGCuGCUGCCGCcccaugcgUAUCAAaaacuCGCCUGCc -3'
miRNA:   3'- -UGuUGACGGCGaa------AUAGUU-----GCGGAUG- -5'
6400 3' -49 NC_001847.1 + 81400 0.73 0.850304
Target:  5'- cGCAGCUGCCGCgugacaugGUCGcaggcgcacaGCGCCaGCc -3'
miRNA:   3'- -UGUUGACGGCGaaa-----UAGU----------UGCGGaUG- -5'
6400 3' -49 NC_001847.1 + 97195 0.73 0.858679
Target:  5'- aGCGGCUuGCuCGCg--AUCAGCGCCgACa -3'
miRNA:   3'- -UGUUGA-CG-GCGaaaUAGUUGCGGaUG- -5'
6400 3' -49 NC_001847.1 + 62376 0.73 0.866818
Target:  5'- cGCAGCUGgUGC---GUCAGCGCCaGCg -3'
miRNA:   3'- -UGUUGACgGCGaaaUAGUUGCGGaUG- -5'
6400 3' -49 NC_001847.1 + 89589 0.72 0.88975
Target:  5'- cGCGACgccGCCGCg--GUgAACGCgCUGCg -3'
miRNA:   3'- -UGUUGa--CGGCGaaaUAgUUGCG-GAUG- -5'
6400 3' -49 NC_001847.1 + 36159 0.72 0.910336
Target:  5'- uGCAGCgGCUGCagg--CAACGCUUGCg -3'
miRNA:   3'- -UGUUGaCGGCGaaauaGUUGCGGAUG- -5'
6400 3' -49 NC_001847.1 + 104392 0.72 0.910336
Target:  5'- uGCAGCggGCCGCg--GUCuACGCCcGCc -3'
miRNA:   3'- -UGUUGa-CGGCGaaaUAGuUGCGGaUG- -5'
6400 3' -49 NC_001847.1 + 49483 0.72 0.910336
Target:  5'- cGCuGCUGCUGCUgaucacccugAUCGGCGCCg-- -3'
miRNA:   3'- -UGuUGACGGCGAaa--------UAGUUGCGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.